miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29215 5' -56.2 NC_006150.1 + 130576 0.66 0.961044
Target:  5'- aGUUCGCA---AGCGCACCAC-UCc- -3'
miRNA:   3'- gCGAGCGUgugUCGCGUGGUGuAGcc -5'
29215 5' -56.2 NC_006150.1 + 40361 0.66 0.961044
Target:  5'- uCGCaugUCGCACGCAGCG-ACCAaaGUUGu -3'
miRNA:   3'- -GCG---AGCGUGUGUCGCgUGGUg-UAGCc -5'
29215 5' -56.2 NC_006150.1 + 24127 0.66 0.957534
Target:  5'- uGCuUCGCagACACAGCGC-CCaugagaACAUCaGGc -3'
miRNA:   3'- gCG-AGCG--UGUGUCGCGuGG------UGUAG-CC- -5'
29215 5' -56.2 NC_006150.1 + 192192 0.66 0.957534
Target:  5'- gGCUCGCACAU-GCGauguGCCuCAgaagcUCGGg -3'
miRNA:   3'- gCGAGCGUGUGuCGCg---UGGuGU-----AGCC- -5'
29215 5' -56.2 NC_006150.1 + 75648 0.66 0.957534
Target:  5'- aGCUCGgacaGCACAGaGUugCGCA-CGGu -3'
miRNA:   3'- gCGAGCg---UGUGUCgCGugGUGUaGCC- -5'
29215 5' -56.2 NC_006150.1 + 82054 0.66 0.957534
Target:  5'- gCGCUCGCugAacaAGCGC-CUGCAg-GGc -3'
miRNA:   3'- -GCGAGCGugUg--UCGCGuGGUGUagCC- -5'
29215 5' -56.2 NC_006150.1 + 106051 0.66 0.95343
Target:  5'- gGC-CGCgugacucGCGCAGCcaucuGUcaACCACGUCGGa -3'
miRNA:   3'- gCGaGCG-------UGUGUCG-----CG--UGGUGUAGCC- -5'
29215 5' -56.2 NC_006150.1 + 88446 0.66 0.951479
Target:  5'- gGCUC-CACGucguccgggccgcccUAGCGCuCCgACGUCGGg -3'
miRNA:   3'- gCGAGcGUGU---------------GUCGCGuGG-UGUAGCC- -5'
29215 5' -56.2 NC_006150.1 + 18508 0.66 0.949879
Target:  5'- aGUUCGCGuguuuCAUuuAGCGCuACCAUAUCaGGa -3'
miRNA:   3'- gCGAGCGU-----GUG--UCGCG-UGGUGUAG-CC- -5'
29215 5' -56.2 NC_006150.1 + 73693 0.66 0.945727
Target:  5'- uGaCUCGCAaGCGGCG-GCCGCGacgCGGa -3'
miRNA:   3'- gC-GAGCGUgUGUCGCgUGGUGUa--GCC- -5'
29215 5' -56.2 NC_006150.1 + 58657 0.67 0.936763
Target:  5'- uCGCUCGCcgauCAGgGUaccGCCACAUCa- -3'
miRNA:   3'- -GCGAGCGugu-GUCgCG---UGGUGUAGcc -5'
29215 5' -56.2 NC_006150.1 + 221454 0.67 0.931947
Target:  5'- -GCccuUCaCGC-CAGCGCGCCACccCGGa -3'
miRNA:   3'- gCG---AGcGUGuGUCGCGUGGUGuaGCC- -5'
29215 5' -56.2 NC_006150.1 + 92673 0.67 0.926907
Target:  5'- gGCggCGUGCACGcCGCACCAuCAUCa- -3'
miRNA:   3'- gCGa-GCGUGUGUcGCGUGGU-GUAGcc -5'
29215 5' -56.2 NC_006150.1 + 94758 0.67 0.926907
Target:  5'- aGuCUCGCugGuuGCGCGCCAUggCGu -3'
miRNA:   3'- gC-GAGCGugUguCGCGUGGUGuaGCc -5'
29215 5' -56.2 NC_006150.1 + 202864 0.67 0.921642
Target:  5'- aGCUgGCAgCGCGG-GCACCugGaacgCGGg -3'
miRNA:   3'- gCGAgCGU-GUGUCgCGUGGugUa---GCC- -5'
29215 5' -56.2 NC_006150.1 + 218151 0.67 0.916154
Target:  5'- aGC-CGCGC-UAGCGaCACCAC-UUGGu -3'
miRNA:   3'- gCGaGCGUGuGUCGC-GUGGUGuAGCC- -5'
29215 5' -56.2 NC_006150.1 + 180888 0.67 0.910442
Target:  5'- aGCUgucaaucucUGCAgGCGGCGCGgCCACAgcgacuugCGGu -3'
miRNA:   3'- gCGA---------GCGUgUGUCGCGU-GGUGUa-------GCC- -5'
29215 5' -56.2 NC_006150.1 + 81816 0.68 0.904509
Target:  5'- gCGCUUGUucaGCgAGCGC-CCugGUUGGg -3'
miRNA:   3'- -GCGAGCGug-UG-UCGCGuGGugUAGCC- -5'
29215 5' -56.2 NC_006150.1 + 102260 0.68 0.904509
Target:  5'- -cUUCGCACuguuguuugaGCAGCGCcuCCGCcUCGGa -3'
miRNA:   3'- gcGAGCGUG----------UGUCGCGu-GGUGuAGCC- -5'
29215 5' -56.2 NC_006150.1 + 69840 0.68 0.904509
Target:  5'- aGcCUC-CACGCAGCGCcACCGCAgucCGu -3'
miRNA:   3'- gC-GAGcGUGUGUCGCG-UGGUGUa--GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.