miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29217 5' -53.8 NC_006150.1 + 101249 0.66 0.988187
Target:  5'- gGGUGacuuACCCaACU--UUCGCAAGCGa -3'
miRNA:   3'- -CCACgu--UGGG-UGAacAGGCGUUCGCc -5'
29217 5' -53.8 NC_006150.1 + 180423 0.66 0.988043
Target:  5'- -cUGCAacGCCUAUUgcgGUUCGCAcagccacGGCGGu -3'
miRNA:   3'- ccACGU--UGGGUGAa--CAGGCGU-------UCGCC- -5'
29217 5' -53.8 NC_006150.1 + 73351 0.66 0.985036
Target:  5'- -cUGCGAUCCGCa-GUgCGCAGGCa- -3'
miRNA:   3'- ccACGUUGGGUGaaCAgGCGUUCGcc -5'
29217 5' -53.8 NC_006150.1 + 148612 0.66 0.983239
Target:  5'- cGGaaCGGCCCGCUUaccGUCCGUcucggaccGGCGGu -3'
miRNA:   3'- -CCacGUUGGGUGAA---CAGGCGu-------UCGCC- -5'
29217 5' -53.8 NC_006150.1 + 207888 0.66 0.983239
Target:  5'- -aUGCu-CCCAg-UGUCCGCcuaacGGCGGg -3'
miRNA:   3'- ccACGuuGGGUgaACAGGCGu----UCGCC- -5'
29217 5' -53.8 NC_006150.1 + 77639 0.66 0.983051
Target:  5'- --gGUAGCCCcCUcgccgucUGUUgCGCAAGCGGu -3'
miRNA:   3'- ccaCGUUGGGuGA-------ACAG-GCGUUCGCC- -5'
29217 5' -53.8 NC_006150.1 + 160145 0.66 0.981283
Target:  5'- cGGUGauacuACCCACggUGcuggCCGCcAGUGGc -3'
miRNA:   3'- -CCACgu---UGGGUGa-ACa---GGCGuUCGCC- -5'
29217 5' -53.8 NC_006150.1 + 132659 0.66 0.980664
Target:  5'- --cGcCAGCCCAUagGUCCGagccgccuuguaaaCAAGCGGu -3'
miRNA:   3'- ccaC-GUUGGGUGaaCAGGC--------------GUUCGCC- -5'
29217 5' -53.8 NC_006150.1 + 85040 0.67 0.97916
Target:  5'- aGGUGCAGCUUGagc-UCCGUGAGCGc -3'
miRNA:   3'- -CCACGUUGGGUgaacAGGCGUUCGCc -5'
29217 5' -53.8 NC_006150.1 + 217630 0.67 0.976865
Target:  5'- uGUGCAACCugugCAUUUGcCUGCGccagcgcagGGCGGu -3'
miRNA:   3'- cCACGUUGG----GUGAACaGGCGU---------UCGCC- -5'
29217 5' -53.8 NC_006150.1 + 167704 0.67 0.971725
Target:  5'- uGGUGCGucaagcgcuCCCAUcguccagGUCCGUcgcgagaucGAGCGGa -3'
miRNA:   3'- -CCACGUu--------GGGUGaa-----CAGGCG---------UUCGCC- -5'
29217 5' -53.8 NC_006150.1 + 88484 0.68 0.96581
Target:  5'- cGGguagGCAGCCgGCUUGccCCGaCGAGCccuGGa -3'
miRNA:   3'- -CCa---CGUUGGgUGAACa-GGC-GUUCG---CC- -5'
29217 5' -53.8 NC_006150.1 + 141116 0.69 0.942994
Target:  5'- -cUGCAAUaCCACgcucuaCCGCGAGCGGc -3'
miRNA:   3'- ccACGUUG-GGUGaaca--GGCGUUCGCC- -5'
29217 5' -53.8 NC_006150.1 + 122571 0.69 0.941643
Target:  5'- uGUGCuguGCCUAUaaacggUUGcagaagaacgaccuUCCGCGAGCGGg -3'
miRNA:   3'- cCACGu--UGGGUG------AAC--------------AGGCGUUCGCC- -5'
29217 5' -53.8 NC_006150.1 + 88408 0.69 0.933597
Target:  5'- cGGUGCGcggacgGCCgCGCUggGUCUGCc-GCGGu -3'
miRNA:   3'- -CCACGU------UGG-GUGAa-CAGGCGuuCGCC- -5'
29217 5' -53.8 NC_006150.1 + 75025 0.69 0.923276
Target:  5'- --aGCGGCCCGCUcggaggaacUG-CCGguGGUGGg -3'
miRNA:   3'- ccaCGUUGGGUGA---------ACaGGCguUCGCC- -5'
29217 5' -53.8 NC_006150.1 + 92690 0.69 0.923276
Target:  5'- gGGUGCGuggCUACUggucGUUCGUggGCGGu -3'
miRNA:   3'- -CCACGUug-GGUGAa---CAGGCGuuCGCC- -5'
29217 5' -53.8 NC_006150.1 + 71230 0.7 0.902376
Target:  5'- -uUGCGACaCCACcacagcaacagCCGCAAGCGGc -3'
miRNA:   3'- ccACGUUG-GGUGaaca-------GGCGUUCGCC- -5'
29217 5' -53.8 NC_006150.1 + 137891 0.71 0.886814
Target:  5'- uGUGUAACCUACUUcagCCGCcAGCGc -3'
miRNA:   3'- cCACGUUGGGUGAAca-GGCGuUCGCc -5'
29217 5' -53.8 NC_006150.1 + 73655 0.76 0.626615
Target:  5'- cGUGCGAUCCACagagcggcgGUCCGCucuGCGGu -3'
miRNA:   3'- cCACGUUGGGUGaa-------CAGGCGuu-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.