Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29218 | 5' | -58.5 | NC_006150.1 | + | 42493 | 0.66 | 0.858692 |
Target: 5'- uUGUAUCCCaGAACUGGGACgauuguuuaguaGGUgACAa -3' miRNA: 3'- uACGUGGGG-CUUGACCCUGa-----------CCG-UGU- -5' |
|||||||
29218 | 5' | -58.5 | NC_006150.1 | + | 221201 | 0.67 | 0.820573 |
Target: 5'- -gGCACUCCGGGgUGGcGcGCUGGCGu- -3' miRNA: 3'- uaCGUGGGGCUUgACC-C-UGACCGUgu -5' |
|||||||
29218 | 5' | -58.5 | NC_006150.1 | + | 88332 | 0.67 | 0.812134 |
Target: 5'- cUGCACCCC-AGCUGGGcCUcGCGa- -3' miRNA: 3'- uACGUGGGGcUUGACCCuGAcCGUgu -5' |
|||||||
29218 | 5' | -58.5 | NC_006150.1 | + | 73461 | 0.68 | 0.776904 |
Target: 5'- gGUGUAgcgugauauauCCUCGAACUGGGAaugcaugGGCACc -3' miRNA: 3'- -UACGU-----------GGGGCUUGACCCUga-----CCGUGu -5' |
|||||||
29218 | 5' | -58.5 | NC_006150.1 | + | 218810 | 0.71 | 0.581956 |
Target: 5'- -aGCACCCCGAACgaUGGaagccuACUGGCAa- -3' miRNA: 3'- uaCGUGGGGCUUG--ACCc-----UGACCGUgu -5' |
|||||||
29218 | 5' | -58.5 | NC_006150.1 | + | 74916 | 0.71 | 0.562258 |
Target: 5'- -aGCucgUCCCGAGcCUGGGACaGGCGCu -3' miRNA: 3'- uaCGu--GGGGCUU-GACCCUGaCCGUGu -5' |
|||||||
29218 | 5' | -58.5 | NC_006150.1 | + | 128726 | 1.06 | 0.003354 |
Target: 5'- gAUGCACCCCGAACUGGGACUGGCACAc -3' miRNA: 3'- -UACGUGGGGCUUGACCCUGACCGUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home