miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29219 3' -54.2 NC_006150.1 + 145261 0.66 0.97972
Target:  5'- uGAGcgCCGgUUCGC-GAUCgAGGAGUc -3'
miRNA:   3'- cCUUa-GGCgAAGCGcCUAGgUCCUCG- -5'
29219 3' -54.2 NC_006150.1 + 149356 0.67 0.963516
Target:  5'- cGAAUCuCGCaua-CGGGUCgGGGAGCc -3'
miRNA:   3'- cCUUAG-GCGaagcGCCUAGgUCCUCG- -5'
29219 3' -54.2 NC_006150.1 + 117966 0.68 0.960125
Target:  5'- aGGGcgUCGCUUCGUGaacGA-CCGGGuGGCa -3'
miRNA:   3'- -CCUuaGGCGAAGCGC---CUaGGUCC-UCG- -5'
29219 3' -54.2 NC_006150.1 + 132447 0.68 0.956522
Target:  5'- aGGAGuuugucUCCGCggUCGCGGcucuggcCCAGGAcgaGCu -3'
miRNA:   3'- -CCUU------AGGCGa-AGCGCCua-----GGUCCU---CG- -5'
29219 3' -54.2 NC_006150.1 + 88667 0.68 0.955775
Target:  5'- cGGAA-CCGCggcagacccagCGCGGccGUCCgcgcaccgcaGGGAGCa -3'
miRNA:   3'- -CCUUaGGCGaa---------GCGCC--UAGG----------UCCUCG- -5'
29219 3' -54.2 NC_006150.1 + 220755 0.68 0.948666
Target:  5'- aGAGUuaGCgUgGUGGGagcUCCGGGAGCa -3'
miRNA:   3'- cCUUAggCGaAgCGCCU---AGGUCCUCG- -5'
29219 3' -54.2 NC_006150.1 + 183961 0.68 0.948666
Target:  5'- ----cCCGCUgccaUCuuGGAguaUCCAGGAGCa -3'
miRNA:   3'- ccuuaGGCGA----AGcgCCU---AGGUCCUCG- -5'
29219 3' -54.2 NC_006150.1 + 208141 0.69 0.925103
Target:  5'- cGGGGcccgCCGUUagGCGGAcaCUGGGAGCa -3'
miRNA:   3'- -CCUUa---GGCGAagCGCCUa-GGUCCUCG- -5'
29219 3' -54.2 NC_006150.1 + 216923 0.7 0.90823
Target:  5'- aGGGcgCUGCggUCGCGGGU-CAGGcacGGCu -3'
miRNA:   3'- -CCUuaGGCGa-AGCGCCUAgGUCC---UCG- -5'
29219 3' -54.2 NC_006150.1 + 220938 0.7 0.882595
Target:  5'- cGGAGaCCuGCguaGCGGAgaugcugCCAGGAGUg -3'
miRNA:   3'- -CCUUaGG-CGaagCGCCUa------GGUCCUCG- -5'
29219 3' -54.2 NC_006150.1 + 125529 0.72 0.804417
Target:  5'- gGGGAUCCGUUgUGCGGAacagaggcuaUCGGGGGCu -3'
miRNA:   3'- -CCUUAGGCGAaGCGCCUa---------GGUCCUCG- -5'
29219 3' -54.2 NC_006150.1 + 89337 0.73 0.777726
Target:  5'- aGGAAggCCgGCUUCuCGGGaugCCAGGAGUg -3'
miRNA:   3'- -CCUUa-GG-CGAAGcGCCUa--GGUCCUCG- -5'
29219 3' -54.2 NC_006150.1 + 128850 1.15 0.003117
Target:  5'- gGGAAUCCGCUUCGCGGAUCCAGGAGCg -3'
miRNA:   3'- -CCUUAGGCGAAGCGCCUAGGUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.