miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29219 5' -47 NC_006150.1 + 207428 0.67 0.999912
Target:  5'- aAGCagUCCaUGAcGCGCGAA-AUCAUCCa -3'
miRNA:   3'- cUCG--AGG-AUUuCGCGUUUuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 128603 0.67 0.999912
Target:  5'- -cGCUCCUGGAucCGCGAAgcgGAUUcCCCg -3'
miRNA:   3'- cuCGAGGAUUUc-GCGUUU---UUAGuGGG- -5'
29219 5' -47 NC_006150.1 + 75710 0.67 0.99991
Target:  5'- cAGCUCCaccguGAGCacaucgcucuccgGCGGAGAcUCGCCCc -3'
miRNA:   3'- cUCGAGGau---UUCG-------------CGUUUUU-AGUGGG- -5'
29219 5' -47 NC_006150.1 + 105580 0.67 0.999885
Target:  5'- uGAGUUCCUcuAGuCGCAGAGuguUCAgcggcuggcCCCg -3'
miRNA:   3'- -CUCGAGGAuuUC-GCGUUUUu--AGU---------GGG- -5'
29219 5' -47 NC_006150.1 + 75503 0.67 0.999876
Target:  5'- cAGCUCUcauuGAGCGCGGccccaguuuggcucAuuauAUCACCCa -3'
miRNA:   3'- cUCGAGGau--UUCGCGUU--------------Uu---UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 202846 0.67 0.999835
Target:  5'- aGGCgCUUGAAGCGCGGGAGcuggcagcgcgggCACCUg -3'
miRNA:   3'- cUCGaGGAUUUCGCGUUUUUa------------GUGGG- -5'
29219 5' -47 NC_006150.1 + 115173 0.68 0.999808
Target:  5'- uGGCUCCgguGAGCuuuGCGAGu-UUGCCCa -3'
miRNA:   3'- cUCGAGGau-UUCG---CGUUUuuAGUGGG- -5'
29219 5' -47 NC_006150.1 + 47765 0.68 0.999808
Target:  5'- cAGCUUCUGGAG-GCGAGGA-C-CCCa -3'
miRNA:   3'- cUCGAGGAUUUCgCGUUUUUaGuGGG- -5'
29219 5' -47 NC_006150.1 + 92544 0.68 0.999808
Target:  5'- uGAGCUgCgAGAGCGCGGGcc-CACCg -3'
miRNA:   3'- -CUCGAgGaUUUCGCGUUUuuaGUGGg -5'
29219 5' -47 NC_006150.1 + 70559 0.68 0.999755
Target:  5'- aGAGUUgC-AGGGCGCAAAuuugcuccucAGUCugCCa -3'
miRNA:   3'- -CUCGAgGaUUUCGCGUUU----------UUAGugGG- -5'
29219 5' -47 NC_006150.1 + 103302 0.68 0.999755
Target:  5'- cGAGCucgUCCgcgGGAGgGCGuc-GUUACCCa -3'
miRNA:   3'- -CUCG---AGGa--UUUCgCGUuuuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 85050 0.68 0.999688
Target:  5'- uGAGCUCCguGAGCGCcuuGAUgaGCUCg -3'
miRNA:   3'- -CUCGAGGauUUCGCGuuuUUAg-UGGG- -5'
29219 5' -47 NC_006150.1 + 131030 0.68 0.999607
Target:  5'- aGAGgUUaUGGAGCGCAAAGG-CGCUCg -3'
miRNA:   3'- -CUCgAGgAUUUCGCGUUUUUaGUGGG- -5'
29219 5' -47 NC_006150.1 + 90904 0.68 0.999607
Target:  5'- aAGCagCCUGGGGUGCGGcAGUCACa- -3'
miRNA:   3'- cUCGa-GGAUUUCGCGUUuUUAGUGgg -5'
29219 5' -47 NC_006150.1 + 91507 0.68 0.999588
Target:  5'- gGAGCUCC-AGAGCGguGucgcgcgugCACUCg -3'
miRNA:   3'- -CUCGAGGaUUUCGCguUuuua-----GUGGG- -5'
29219 5' -47 NC_006150.1 + 196869 0.68 0.999579
Target:  5'- -uGCUCUggggaaucuucacaUAAGGCGCAgccAAAAUCaugaGCCCa -3'
miRNA:   3'- cuCGAGG--------------AUUUCGCGU---UUUUAG----UGGG- -5'
29219 5' -47 NC_006150.1 + 69534 0.68 0.999507
Target:  5'- cAGCUgCCUGGAGCuCGAGAAcugCGCCa -3'
miRNA:   3'- cUCGA-GGAUUUCGcGUUUUUa--GUGGg -5'
29219 5' -47 NC_006150.1 + 51535 0.69 0.999386
Target:  5'- cAGUUggCUGGAGCGCAAuuGUcCGCCCc -3'
miRNA:   3'- cUCGAg-GAUUUCGCGUUuuUA-GUGGG- -5'
29219 5' -47 NC_006150.1 + 130138 0.69 0.999373
Target:  5'- gGAGCUCCagcgugcUAGGGUuuuGCAGAAggCugCCg -3'
miRNA:   3'- -CUCGAGG-------AUUUCG---CGUUUUuaGugGG- -5'
29219 5' -47 NC_006150.1 + 37785 0.69 0.999241
Target:  5'- aGGUcuUCCUAucGCGC----GUCACCCc -3'
miRNA:   3'- cUCG--AGGAUuuCGCGuuuuUAGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.