miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2922 3' -65 NC_001493.1 + 87429 0.66 0.503278
Target:  5'- gUCCGcauuUCCaCCAACCCGGUCGCGAc- -3'
miRNA:   3'- uGGGCc---GGG-GGUUGGGCCGGUGCUcg -5'
2922 3' -65 NC_001493.1 + 103730 0.66 0.503278
Target:  5'- uUCCGaCCCCCcacgGACCCGGgCAUGAa- -3'
miRNA:   3'- uGGGCcGGGGG----UUGGGCCgGUGCUcg -5'
2922 3' -65 NC_001493.1 + 119171 0.66 0.503278
Target:  5'- gACCCGccGCCCCCGcgaauaCCGGUucgcaCAgGGGCg -3'
miRNA:   3'- -UGGGC--CGGGGGUug----GGCCG-----GUgCUCG- -5'
2922 3' -65 NC_001493.1 + 3617 0.66 0.503278
Target:  5'- gACCCGccGCCCCCGcgaauaCCGGUucgcaCAgGGGCg -3'
miRNA:   3'- -UGGGC--CGGGGGUug----GGCCG-----GUgCUCG- -5'
2922 3' -65 NC_001493.1 + 113267 0.66 0.49416
Target:  5'- cGCgCGGUCgCCCAGCCaCGGaCC-CG-GCa -3'
miRNA:   3'- -UGgGCCGG-GGGUUGG-GCC-GGuGCuCG- -5'
2922 3' -65 NC_001493.1 + 22920 0.66 0.49416
Target:  5'- aGCCgGGUcguaCCCCGuggaACCUGGUCACGGa- -3'
miRNA:   3'- -UGGgCCG----GGGGU----UGGGCCGGUGCUcg -5'
2922 3' -65 NC_001493.1 + 125298 0.66 0.49416
Target:  5'- gACUCGGaggaUCCCGuCCCGuCgGCGAGCa -3'
miRNA:   3'- -UGGGCCg---GGGGUuGGGCcGgUGCUCG- -5'
2922 3' -65 NC_001493.1 + 9744 0.66 0.49416
Target:  5'- gACUCGGaggaUCCCGuCCCGuCgGCGAGCa -3'
miRNA:   3'- -UGGGCCg---GGGGUuGGGCcGgUGCUCG- -5'
2922 3' -65 NC_001493.1 + 62406 0.66 0.485118
Target:  5'- cGCCCGGuggaccucgcCCCCCGugCCcguGGCCGUG-GCc -3'
miRNA:   3'- -UGGGCC----------GGGGGUugGG---CCGGUGCuCG- -5'
2922 3' -65 NC_001493.1 + 9053 0.66 0.485118
Target:  5'- gACCaCGuugaCCCCgGACCCcGCCACGcGCu -3'
miRNA:   3'- -UGG-GCc---GGGGgUUGGGcCGGUGCuCG- -5'
2922 3' -65 NC_001493.1 + 5482 0.66 0.485118
Target:  5'- cCCUGGUCUCCuccccggugAACCCGGCUcCGAuGUa -3'
miRNA:   3'- uGGGCCGGGGG---------UUGGGCCGGuGCU-CG- -5'
2922 3' -65 NC_001493.1 + 73030 0.66 0.485118
Target:  5'- --gCGaGCuCUCCAuCCCGGCCcACGAGUu -3'
miRNA:   3'- uggGC-CG-GGGGUuGGGCCGG-UGCUCG- -5'
2922 3' -65 NC_001493.1 + 124607 0.66 0.485118
Target:  5'- gACCaCGuugaCCCCgGACCCcGCCACGcGCu -3'
miRNA:   3'- -UGG-GCc---GGGGgUUGGGcCGGUGCuCG- -5'
2922 3' -65 NC_001493.1 + 121036 0.66 0.485118
Target:  5'- cCCUGGUCUCCuccccggugAACCCGGCUcCGAuGUa -3'
miRNA:   3'- uGGGCCGGGGG---------UUGGGCCGGuGCU-CG- -5'
2922 3' -65 NC_001493.1 + 110878 0.66 0.485118
Target:  5'- gAUCCGGUCCCggcggguuuCAGCaCCaGCCACGAa- -3'
miRNA:   3'- -UGGGCCGGGG---------GUUG-GGcCGGUGCUcg -5'
2922 3' -65 NC_001493.1 + 14162 0.66 0.485118
Target:  5'- cCCCGGgugacgaCCUCGugACCCuGGCCcucaACGAGCu -3'
miRNA:   3'- uGGGCCg------GGGGU--UGGG-CCGG----UGCUCG- -5'
2922 3' -65 NC_001493.1 + 53867 0.66 0.476156
Target:  5'- uGCUCGGUUUCUAGCUCGggaGCC-CGGGCg -3'
miRNA:   3'- -UGGGCCGGGGGUUGGGC---CGGuGCUCG- -5'
2922 3' -65 NC_001493.1 + 19222 0.66 0.476156
Target:  5'- uACCuCGaGCCCCUcucugAGCCCGGaCAucgucauguCGAGCg -3'
miRNA:   3'- -UGG-GC-CGGGGG-----UUGGGCCgGU---------GCUCG- -5'
2922 3' -65 NC_001493.1 + 16380 0.66 0.467277
Target:  5'- cACCUGGaauCCCCGACCCaGGUgCACucGGCg -3'
miRNA:   3'- -UGGGCCg--GGGGUUGGG-CCG-GUGc-UCG- -5'
2922 3' -65 NC_001493.1 + 73619 0.66 0.467277
Target:  5'- cACCgCGGUCCCC--CCUGcGCUGCGGuGCa -3'
miRNA:   3'- -UGG-GCCGGGGGuuGGGC-CGGUGCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.