miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2922 5' -52.9 NC_001493.1 + 12842 0.66 0.978604
Target:  5'- cGGGUcGcGUCCGGgguCGGGGcgcUCGGg -3'
miRNA:   3'- cCUCAuCuCAGGUCaauGCCCC---AGCC- -5'
2922 5' -52.9 NC_001493.1 + 128396 0.66 0.978604
Target:  5'- cGGGUcGcGUCCGGgguCGGGGcgcUCGGg -3'
miRNA:   3'- cCUCAuCuCAGGUCaauGCCCC---AGCC- -5'
2922 5' -52.9 NC_001493.1 + 103558 0.66 0.977902
Target:  5'- uGGAGaacguguucaugcccGGGUCCG--UGgGGGGUCGGa -3'
miRNA:   3'- -CCUCau-------------CUCAGGUcaAUgCCCCAGCC- -5'
2922 5' -52.9 NC_001493.1 + 14679 0.66 0.973601
Target:  5'- gGGAGUGucccGAGUgCGGcucCGGGGgCGGa -3'
miRNA:   3'- -CCUCAU----CUCAgGUCaauGCCCCaGCC- -5'
2922 5' -52.9 NC_001493.1 + 130233 0.66 0.973601
Target:  5'- gGGAGUGucccGAGUgCGGcucCGGGGgCGGa -3'
miRNA:   3'- -CCUCAU----CUCAgGUCaauGCCCCaGCC- -5'
2922 5' -52.9 NC_001493.1 + 79415 0.67 0.953606
Target:  5'- aGGGcgGGAG-CCug-UGCGGGGUCGa -3'
miRNA:   3'- cCUCa-UCUCaGGucaAUGCCCCAGCc -5'
2922 5' -52.9 NC_001493.1 + 12933 0.68 0.949486
Target:  5'- gGGAGUAGAGccUCCgucccgggaaGGUU-CGGGaGUgGGg -3'
miRNA:   3'- -CCUCAUCUC--AGG----------UCAAuGCCC-CAgCC- -5'
2922 5' -52.9 NC_001493.1 + 128487 0.68 0.949486
Target:  5'- gGGAGUAGAGccUCCgucccgggaaGGUU-CGGGaGUgGGg -3'
miRNA:   3'- -CCUCAUCUC--AGG----------UCAAuGCCC-CAgCC- -5'
2922 5' -52.9 NC_001493.1 + 98382 0.68 0.94513
Target:  5'- gGGAGUuucguGAGgagCAGUaauuucACGGGGUUGGa -3'
miRNA:   3'- -CCUCAu----CUCag-GUCAa-----UGCCCCAGCC- -5'
2922 5' -52.9 NC_001493.1 + 42885 0.68 0.935698
Target:  5'- cGGGUGuuGGUgCCGGUUgugAgGGGGUCGGg -3'
miRNA:   3'- cCUCAUc-UCA-GGUCAA---UgCCCCAGCC- -5'
2922 5' -52.9 NC_001493.1 + 24160 0.68 0.935698
Target:  5'- -cGGUGGGGUCCAGg--UGGGG-CGa -3'
miRNA:   3'- ccUCAUCUCAGGUCaauGCCCCaGCc -5'
2922 5' -52.9 NC_001493.1 + 48293 1.14 0.003053
Target:  5'- gGGAGUAGAGUCCAGUUACGGGGUCGGg -3'
miRNA:   3'- -CCUCAUCUCAGGUCAAUGCCCCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.