miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29220 3' -59.2 NC_006150.1 + 184062 0.66 0.845335
Target:  5'- gGCGGGGGCAU-GCCUUaCGGaGUCGCu -3'
miRNA:   3'- aUGCCUCUGUGuCGGAGcGUC-CGGUG- -5'
29220 3' -59.2 NC_006150.1 + 87923 0.66 0.83745
Target:  5'- -cCGGGGccuCGCAGCCUCGguGGg--- -3'
miRNA:   3'- auGCCUCu--GUGUCGGAGCguCCggug -5'
29220 3' -59.2 NC_006150.1 + 184147 0.66 0.83745
Target:  5'- -cCGGAGAguUGGCCggCGCAGGUggaggCGCa -3'
miRNA:   3'- auGCCUCUguGUCGGa-GCGUCCG-----GUG- -5'
29220 3' -59.2 NC_006150.1 + 149930 0.66 0.829389
Target:  5'- cACGGugcGACACAG-UUCGCGGuaCACa -3'
miRNA:   3'- aUGCCu--CUGUGUCgGAGCGUCcgGUG- -5'
29220 3' -59.2 NC_006150.1 + 88607 0.66 0.829389
Target:  5'- -cCGGGGaccGCACAG-CUCGCAGGUgGg -3'
miRNA:   3'- auGCCUC---UGUGUCgGAGCGUCCGgUg -5'
29220 3' -59.2 NC_006150.1 + 88216 0.66 0.828574
Target:  5'- -cUGGGGGCGUAGCCaugCGCGuucuccagggagcGGCCGCg -3'
miRNA:   3'- auGCCUCUGUGUCGGa--GCGU-------------CCGGUG- -5'
29220 3' -59.2 NC_006150.1 + 187366 0.66 0.826938
Target:  5'- aGCGGAGGCGacaccagauaagacCAGCaaacauaGCAGGCUGCc -3'
miRNA:   3'- aUGCCUCUGU--------------GUCGgag----CGUCCGGUG- -5'
29220 3' -59.2 NC_006150.1 + 142628 0.66 0.821159
Target:  5'- gGCGGcGAacCGGCCUCGguGG-CACg -3'
miRNA:   3'- aUGCCuCUguGUCGGAGCguCCgGUG- -5'
29220 3' -59.2 NC_006150.1 + 219756 0.66 0.821159
Target:  5'- aGCGGcGGCgGCAGgaCCUgGCGuGGCCGCg -3'
miRNA:   3'- aUGCCuCUG-UGUC--GGAgCGU-CCGGUG- -5'
29220 3' -59.2 NC_006150.1 + 89077 0.66 0.816143
Target:  5'- -cUGGAGcCGCGacccgcauccaggucGCCUC-CAGGCCGCc -3'
miRNA:   3'- auGCCUCuGUGU---------------CGGAGcGUCCGGUG- -5'
29220 3' -59.2 NC_006150.1 + 116262 0.66 0.812767
Target:  5'- gUugGGuccgccACGCAGCCggCGUggauAGGCCGCa -3'
miRNA:   3'- -AugCCuc----UGUGUCGGa-GCG----UCCGGUG- -5'
29220 3' -59.2 NC_006150.1 + 189801 0.67 0.795528
Target:  5'- aUAgGGAG-CACGGCCaa-CAGGCCAa -3'
miRNA:   3'- -AUgCCUCuGUGUCGGagcGUCCGGUg -5'
29220 3' -59.2 NC_006150.1 + 149818 0.67 0.795528
Target:  5'- gGCGGuG-CG-AGCCUgGCuGGCCGCg -3'
miRNA:   3'- aUGCCuCuGUgUCGGAgCGuCCGGUG- -5'
29220 3' -59.2 NC_006150.1 + 32119 0.67 0.786695
Target:  5'- aACGc-GACACGGCCUCa-GGGCCAg -3'
miRNA:   3'- aUGCcuCUGUGUCGGAGcgUCCGGUg -5'
29220 3' -59.2 NC_006150.1 + 203651 0.67 0.786695
Target:  5'- --aGGGGuCgAUGGCCUCGaaAGGCCACa -3'
miRNA:   3'- augCCUCuG-UGUCGGAGCg-UCCGGUG- -5'
29220 3' -59.2 NC_006150.1 + 90728 0.67 0.777732
Target:  5'- -cCGGAGAguUGGUCgaaaagggCGUGGGCCACa -3'
miRNA:   3'- auGCCUCUguGUCGGa-------GCGUCCGGUG- -5'
29220 3' -59.2 NC_006150.1 + 202841 0.67 0.75014
Target:  5'- gGCGGAGGCGCuugaagcgcgggAGCUggcagCGCGGGCa-- -3'
miRNA:   3'- aUGCCUCUGUG------------UCGGa----GCGUCCGgug -5'
29220 3' -59.2 NC_006150.1 + 90990 0.67 0.75014
Target:  5'- aGCGGAGACACAcCCgagGCGGGgCGa -3'
miRNA:   3'- aUGCCUCUGUGUcGGag-CGUCCgGUg -5'
29220 3' -59.2 NC_006150.1 + 150234 0.68 0.740735
Target:  5'- aGCGGGGugGCGuucggcacccuGCCcggGCAGGUCGCg -3'
miRNA:   3'- aUGCCUCugUGU-----------CGGag-CGUCCGGUG- -5'
29220 3' -59.2 NC_006150.1 + 77734 0.68 0.740735
Target:  5'- -cUGGAGAUuguGCCUCGCGGGgCGa -3'
miRNA:   3'- auGCCUCUGuguCGGAGCGUCCgGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.