miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29220 5' -53.8 NC_006150.1 + 116003 0.66 0.980811
Target:  5'- aUUGCGGCCUauccacgcCGGcuGCGUGGCGg- -3'
miRNA:   3'- -AAUGCCGGAgua-----GCUu-CGCAUCGCag -5'
29220 5' -53.8 NC_006150.1 + 116390 0.66 0.978605
Target:  5'- ---gGGCCUCGgauacaccUCGGcuacuuGCGUGGCGUa -3'
miRNA:   3'- aaugCCGGAGU--------AGCUu-----CGCAUCGCAg -5'
29220 5' -53.8 NC_006150.1 + 75745 0.66 0.976218
Target:  5'- cUACGGCUUCAcCG--GCGUGGUGa- -3'
miRNA:   3'- aAUGCCGGAGUaGCuuCGCAUCGCag -5'
29220 5' -53.8 NC_006150.1 + 4086 0.66 0.97364
Target:  5'- cUGgGGUCUCGcCG-AGCaUAGCGUCa -3'
miRNA:   3'- aAUgCCGGAGUaGCuUCGcAUCGCAG- -5'
29220 5' -53.8 NC_006150.1 + 174630 0.66 0.973101
Target:  5'- -gGCGGCCUCGaCGGcagauugaugagcAGCGccacuucUGGCGUUa -3'
miRNA:   3'- aaUGCCGGAGUaGCU-------------UCGC-------AUCGCAG- -5'
29220 5' -53.8 NC_006150.1 + 46357 0.66 0.970866
Target:  5'- -gGCGGUgCUCAUCGGaaaacaaguccgGGCGaagguuuagacUGGCGUCu -3'
miRNA:   3'- aaUGCCG-GAGUAGCU------------UCGC-----------AUCGCAG- -5'
29220 5' -53.8 NC_006150.1 + 86481 0.67 0.961298
Target:  5'- --cCGGCCUgG-CGGAGgGUGGCG-Cg -3'
miRNA:   3'- aauGCCGGAgUaGCUUCgCAUCGCaG- -5'
29220 5' -53.8 NC_006150.1 + 88207 0.67 0.957675
Target:  5'- -gGCGGcCCUC-UgGggGCGUAGCc-- -3'
miRNA:   3'- aaUGCC-GGAGuAgCuuCGCAUCGcag -5'
29220 5' -53.8 NC_006150.1 + 180840 0.68 0.936104
Target:  5'- -gGCGGCCUgAgcaacaGcGGCGUcGGCGUCg -3'
miRNA:   3'- aaUGCCGGAgUag----CuUCGCA-UCGCAG- -5'
29220 5' -53.8 NC_006150.1 + 106615 0.68 0.93108
Target:  5'- -aGCGGCCUCGagCGucGCGcccucucaAGCGUCc -3'
miRNA:   3'- aaUGCCGGAGUa-GCuuCGCa-------UCGCAG- -5'
29220 5' -53.8 NC_006150.1 + 39969 0.68 0.93108
Target:  5'- -cACGGCCgc-UCGAAGCGUucaaugGGUGUa -3'
miRNA:   3'- aaUGCCGGaguAGCUUCGCA------UCGCAg -5'
29220 5' -53.8 NC_006150.1 + 69723 0.7 0.889212
Target:  5'- gUugGGCCUCAaCGccGCGUGuGCGg- -3'
miRNA:   3'- aAugCCGGAGUaGCuuCGCAU-CGCag -5'
29220 5' -53.8 NC_006150.1 + 118725 0.72 0.764866
Target:  5'- ---aGGCCU-GUCGAcagAGCGUGGCGUUc -3'
miRNA:   3'- aaugCCGGAgUAGCU---UCGCAUCGCAG- -5'
29220 5' -53.8 NC_006150.1 + 129133 1.07 0.007807
Target:  5'- uUUACGGCCUCAUCGAAGCGUAGCGUCu -3'
miRNA:   3'- -AAUGCCGGAGUAGCUUCGCAUCGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.