miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29221 3' -57.9 NC_006150.1 + 132785 0.66 0.926999
Target:  5'- aUGCgCUGGCGCAacgcUCUcgagcGGGggCGUCGCc -3'
miRNA:   3'- gGCG-GACUGCGU----AGG-----UCCgaGCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 152913 0.66 0.920234
Target:  5'- cCCGCUgGACGCGugacuauccucggcUgCGGGCgaaGUCGUg -3'
miRNA:   3'- -GGCGGaCUGCGU--------------AgGUCCGag-CAGCG- -5'
29221 3' -57.9 NC_006150.1 + 172133 0.66 0.918621
Target:  5'- gUCGUCaGAUGCGgcacccauccugggcUCCgAGGCUccCGUCGCu -3'
miRNA:   3'- -GGCGGaCUGCGU---------------AGG-UCCGA--GCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 46848 0.66 0.916439
Target:  5'- aUGaCCUGuauuuCGCAuacgUCCAGGUUCcggaauGUCGCg -3'
miRNA:   3'- gGC-GGACu----GCGU----AGGUCCGAG------CAGCG- -5'
29221 3' -57.9 NC_006150.1 + 113337 0.66 0.910836
Target:  5'- uCCGCCuUGGC-CAaCCAGGUcaaGUCGUc -3'
miRNA:   3'- -GGCGG-ACUGcGUaGGUCCGag-CAGCG- -5'
29221 3' -57.9 NC_006150.1 + 102234 0.66 0.910836
Target:  5'- uCCGCCUcggacACGCGacuuUCCAGG-UCuUCGCa -3'
miRNA:   3'- -GGCGGAc----UGCGU----AGGUCCgAGcAGCG- -5'
29221 3' -57.9 NC_006150.1 + 116590 0.67 0.897137
Target:  5'- aUCGCCcugauggccaaaucUGGCGUucAUCCAGGUUuCG-CGCu -3'
miRNA:   3'- -GGCGG--------------ACUGCG--UAGGUCCGA-GCaGCG- -5'
29221 3' -57.9 NC_006150.1 + 115959 0.67 0.892746
Target:  5'- aCC-CUUGG-GCGUCCAaccgcGGCUCGcUCGCc -3'
miRNA:   3'- -GGcGGACUgCGUAGGU-----CCGAGC-AGCG- -5'
29221 3' -57.9 NC_006150.1 + 217453 0.67 0.890833
Target:  5'- aCCGCCgggGACGCuugacugacucgucAUCCGGa-UCGUCaGCg -3'
miRNA:   3'- -GGCGGa--CUGCG--------------UAGGUCcgAGCAG-CG- -5'
29221 3' -57.9 NC_006150.1 + 136171 0.67 0.886298
Target:  5'- aCCGUcagCUGugGCcgCCAGGUUUGcauaacCGCc -3'
miRNA:   3'- -GGCG---GACugCGuaGGUCCGAGCa-----GCG- -5'
29221 3' -57.9 NC_006150.1 + 133391 0.67 0.884324
Target:  5'- -gGCCUGugGCGgacgacgCCGuggaaaccgagggcGGCUCGcagCGCa -3'
miRNA:   3'- ggCGGACugCGUa------GGU--------------CCGAGCa--GCG- -5'
29221 3' -57.9 NC_006150.1 + 174457 0.67 0.882331
Target:  5'- aCCGUC-GAUaGCAUCCucacgauggcgcagcGGuGCUCGUUGCg -3'
miRNA:   3'- -GGCGGaCUG-CGUAGG---------------UC-CGAGCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 118222 0.67 0.879647
Target:  5'- gUGCCUGugGUGuUCCAgGGCUaCGgcgUGCu -3'
miRNA:   3'- gGCGGACugCGU-AGGU-CCGA-GCa--GCG- -5'
29221 3' -57.9 NC_006150.1 + 216970 0.67 0.865748
Target:  5'- uUCGCgaGcauuGCGUAUCCAGcGCaUgGUCGCg -3'
miRNA:   3'- -GGCGgaC----UGCGUAGGUC-CG-AgCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 71135 0.68 0.85851
Target:  5'- uCCGCCagGugGCuUCUAuGGCauaUGUCGCu -3'
miRNA:   3'- -GGCGGa-CugCGuAGGU-CCGa--GCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 32626 0.68 0.85851
Target:  5'- gCGUCUGGCGU-UCCugGGGCgUGUCGUu -3'
miRNA:   3'- gGCGGACUGCGuAGG--UCCGaGCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 203127 0.68 0.851086
Target:  5'- aCCGCCcgaGGCGCccgcguUCCAGGUgccCG-CGCu -3'
miRNA:   3'- -GGCGGa--CUGCGu-----AGGUCCGa--GCaGCG- -5'
29221 3' -57.9 NC_006150.1 + 3837 0.68 0.850334
Target:  5'- -aGCCUGACGCuAUgcucggcgagaccCCAGGaCUCGggGCu -3'
miRNA:   3'- ggCGGACUGCG-UA-------------GGUCC-GAGCagCG- -5'
29221 3' -57.9 NC_006150.1 + 139650 0.68 0.84958
Target:  5'- gUCGCCUGAUGCccucccguaccCCAGGCggcgacCGUcCGCc -3'
miRNA:   3'- -GGCGGACUGCGua---------GGUCCGa-----GCA-GCG- -5'
29221 3' -57.9 NC_006150.1 + 37909 0.68 0.843483
Target:  5'- aCCGCCagGGCGC-UCUGGGaC-CGUcCGCg -3'
miRNA:   3'- -GGCGGa-CUGCGuAGGUCC-GaGCA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.