miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29221 3' -57.9 NC_006150.1 + 125805 0.71 0.664344
Target:  5'- uCCGCugCUGACGagagcagCCAGGUagagCGUCGCg -3'
miRNA:   3'- -GGCG--GACUGCgua----GGUCCGa---GCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 132785 0.66 0.926999
Target:  5'- aUGCgCUGGCGCAacgcUCUcgagcGGGggCGUCGCc -3'
miRNA:   3'- gGCG-GACUGCGU----AGG-----UCCgaGCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 152913 0.66 0.920234
Target:  5'- cCCGCUgGACGCGugacuauccucggcUgCGGGCgaaGUCGUg -3'
miRNA:   3'- -GGCGGaCUGCGU--------------AgGUCCGag-CAGCG- -5'
29221 3' -57.9 NC_006150.1 + 46848 0.66 0.916439
Target:  5'- aUGaCCUGuauuuCGCAuacgUCCAGGUUCcggaauGUCGCg -3'
miRNA:   3'- gGC-GGACu----GCGU----AGGUCCGAG------CAGCG- -5'
29221 3' -57.9 NC_006150.1 + 217453 0.67 0.890833
Target:  5'- aCCGCCgggGACGCuugacugacucgucAUCCGGa-UCGUCaGCg -3'
miRNA:   3'- -GGCGGa--CUGCG--------------UAGGUCcgAGCAG-CG- -5'
29221 3' -57.9 NC_006150.1 + 133391 0.67 0.884324
Target:  5'- -gGCCUGugGCGgacgacgCCGuggaaaccgagggcGGCUCGcagCGCa -3'
miRNA:   3'- ggCGGACugCGUa------GGU--------------CCGAGCa--GCG- -5'
29221 3' -57.9 NC_006150.1 + 174457 0.67 0.882331
Target:  5'- aCCGUC-GAUaGCAUCCucacgauggcgcagcGGuGCUCGUUGCg -3'
miRNA:   3'- -GGCGGaCUG-CGUAGG---------------UC-CGAGCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 118222 0.67 0.879647
Target:  5'- gUGCCUGugGUGuUCCAgGGCUaCGgcgUGCu -3'
miRNA:   3'- gGCGGACugCGU-AGGU-CCGA-GCa--GCG- -5'
29221 3' -57.9 NC_006150.1 + 3837 0.68 0.850334
Target:  5'- -aGCCUGACGCuAUgcucggcgagaccCCAGGaCUCGggGCu -3'
miRNA:   3'- ggCGGACUGCG-UA-------------GGUCC-GAGCagCG- -5'
29221 3' -57.9 NC_006150.1 + 101072 0.71 0.664344
Target:  5'- -gGCCUcGGCGCAUCgCGGGuCUCGgCGUu -3'
miRNA:   3'- ggCGGA-CUGCGUAG-GUCC-GAGCaGCG- -5'
29221 3' -57.9 NC_006150.1 + 170350 0.71 0.674041
Target:  5'- gCCGCUUGugGgGUCCcaggucagagAGGaCUCGUcCGCc -3'
miRNA:   3'- -GGCGGACugCgUAGG----------UCC-GAGCA-GCG- -5'
29221 3' -57.9 NC_006150.1 + 84447 0.68 0.819652
Target:  5'- uCCGCUUug-GUGUCCAGGUUCGUCu- -3'
miRNA:   3'- -GGCGGAcugCGUAGGUCCGAGCAGcg -5'
29221 3' -57.9 NC_006150.1 + 167708 0.68 0.834918
Target:  5'- gCGUCaaGCGCucccaucGUCCAGGUcCGUCGCg -3'
miRNA:   3'- gGCGGacUGCG-------UAGGUCCGaGCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 37909 0.68 0.843483
Target:  5'- aCCGCCagGGCGC-UCUGGGaC-CGUcCGCg -3'
miRNA:   3'- -GGCGGa-CUGCGuAGGUCC-GaGCA-GCG- -5'
29221 3' -57.9 NC_006150.1 + 110535 0.68 0.843483
Target:  5'- aCGCCgUGugGCAUCCA-GCg-GUUGUa -3'
miRNA:   3'- gGCGG-ACugCGUAGGUcCGagCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 172133 0.66 0.918621
Target:  5'- gUCGUCaGAUGCGgcacccauccugggcUCCgAGGCUccCGUCGCu -3'
miRNA:   3'- -GGCGGaCUGCGU---------------AGG-UCCGA--GCAGCG- -5'
29221 3' -57.9 NC_006150.1 + 88765 0.81 0.235112
Target:  5'- gCCGCCUGucccgauccagcACuGCGUCCAgGGCUCGUCGg -3'
miRNA:   3'- -GGCGGAC------------UG-CGUAGGU-CCGAGCAGCg -5'
29221 3' -57.9 NC_006150.1 + 101455 0.71 0.700044
Target:  5'- cCCGCUuccuaacgacaUGACGCGUCUuucauugcaggacaAGaGCUCGUCGa -3'
miRNA:   3'- -GGCGG-----------ACUGCGUAGG--------------UC-CGAGCAGCg -5'
29221 3' -57.9 NC_006150.1 + 133265 0.7 0.731298
Target:  5'- uUCGUacacaCUGGCGCAgggcgauaugUgCAGGCUCGUcCGCg -3'
miRNA:   3'- -GGCG-----GACUGCGU----------AgGUCCGAGCA-GCG- -5'
29221 3' -57.9 NC_006150.1 + 216636 0.69 0.783121
Target:  5'- cUCGCCgUGGCggcugcggugcucgGCAgggaCCAgGGCUCGUUGCa -3'
miRNA:   3'- -GGCGG-ACUG--------------CGUa---GGU-CCGAGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.