miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29222 5' -57.7 NC_006150.1 + 606 0.66 0.928679
Target:  5'- cGGCUCGCGugGaGgGagggggaaGGGCCG-CGUg- -3'
miRNA:   3'- -CCGAGUGCugC-CgU--------UCCGGCaGCAgc -5'
29222 5' -57.7 NC_006150.1 + 140976 0.66 0.91828
Target:  5'- aGGUUCugGGCGGCGAuuacGGUgGUCc-CGg -3'
miRNA:   3'- -CCGAGugCUGCCGUU----CCGgCAGcaGC- -5'
29222 5' -57.7 NC_006150.1 + 534 0.66 0.91828
Target:  5'- cGGCcucggCACGACGGCGacuggggaaggGGGUCGcCGgggccgCGg -3'
miRNA:   3'- -CCGa----GUGCUGCCGU-----------UCCGGCaGCa-----GC- -5'
29222 5' -57.7 NC_006150.1 + 90635 0.67 0.907019
Target:  5'- uGCUCAgGGCGGagauGGCCGcgacccaGUCGg -3'
miRNA:   3'- cCGAGUgCUGCCguu-CCGGCag-----CAGC- -5'
29222 5' -57.7 NC_006150.1 + 1551 0.67 0.907019
Target:  5'- cGGCaUCugGAgcuCGGCAGGuGCCGgauUCGUg- -3'
miRNA:   3'- -CCG-AGugCU---GCCGUUC-CGGC---AGCAgc -5'
29222 5' -57.7 NC_006150.1 + 89038 0.67 0.901069
Target:  5'- cGGCUaUGCGACGGCGAcaucGGCCGcCa--- -3'
miRNA:   3'- -CCGA-GUGCUGCCGUU----CCGGCaGcagc -5'
29222 5' -57.7 NC_006150.1 + 202990 0.67 0.881967
Target:  5'- aGGCggagGCGACGGCuguGGCUGcUGUUGa -3'
miRNA:   3'- -CCGag--UGCUGCCGuu-CCGGCaGCAGC- -5'
29222 5' -57.7 NC_006150.1 + 108866 0.67 0.875194
Target:  5'- uGGCUCuCGGCGGCcgauucuGGCUGUUuccUCGg -3'
miRNA:   3'- -CCGAGuGCUGCCGuu-----CCGGCAGc--AGC- -5'
29222 5' -57.7 NC_006150.1 + 125711 0.67 0.875194
Target:  5'- aGGUcggCGCGACcGUcAGGCCGgCGUCGc -3'
miRNA:   3'- -CCGa--GUGCUGcCGuUCCGGCaGCAGC- -5'
29222 5' -57.7 NC_006150.1 + 8876 0.67 0.875194
Target:  5'- aGCUCcucaaGGCGcGCAAcGGCuCGUCGUCu -3'
miRNA:   3'- cCGAGug---CUGC-CGUU-CCG-GCAGCAGc -5'
29222 5' -57.7 NC_006150.1 + 165566 0.68 0.871035
Target:  5'- uGCUCACGcucgugauauucgagGUGGCGAcGGuuGUCGUCa -3'
miRNA:   3'- cCGAGUGC---------------UGCCGUU-CCggCAGCAGc -5'
29222 5' -57.7 NC_006150.1 + 174107 0.68 0.868224
Target:  5'- cGGC-CAgGGCGGCGGGGCaGUUGcUGa -3'
miRNA:   3'- -CCGaGUgCUGCCGUUCCGgCAGCaGC- -5'
29222 5' -57.7 NC_006150.1 + 36738 0.68 0.861062
Target:  5'- aGGCUCGUGGCGGCGGGuCCGUU-UCu -3'
miRNA:   3'- -CCGAGUGCUGCCGUUCcGGCAGcAGc -5'
29222 5' -57.7 NC_006150.1 + 106254 0.69 0.796675
Target:  5'- gGGCUCAgcUGACGGCAAcagccgcGGCCG-CGg-- -3'
miRNA:   3'- -CCGAGU--GCUGCCGUU-------CCGGCaGCagc -5'
29222 5' -57.7 NC_006150.1 + 139662 0.7 0.753215
Target:  5'- -uCUgAUGGCGGCAcAGGCUGUCGUa- -3'
miRNA:   3'- ccGAgUGCUGCCGU-UCCGGCAGCAgc -5'
29222 5' -57.7 NC_006150.1 + 131933 0.7 0.744031
Target:  5'- gGGCg-ACGACGGCcuuGCCGUCGUg- -3'
miRNA:   3'- -CCGagUGCUGCCGuucCGGCAGCAgc -5'
29222 5' -57.7 NC_006150.1 + 47672 0.72 0.637914
Target:  5'- uGGCUCgucaucaucaucgGCGACGGC--GGCCG-CGUCc -3'
miRNA:   3'- -CCGAG-------------UGCUGCCGuuCCGGCaGCAGc -5'
29222 5' -57.7 NC_006150.1 + 203080 0.73 0.608726
Target:  5'- aGCUCgGCGACGGCGAGGaggagcaCCuUCGUCa -3'
miRNA:   3'- cCGAG-UGCUGCCGUUCC-------GGcAGCAGc -5'
29222 5' -57.7 NC_006150.1 + 37705 0.74 0.514265
Target:  5'- uGUUgCAUGACcGCAAGGCCGUCGUgCGu -3'
miRNA:   3'- cCGA-GUGCUGcCGUUCCGGCAGCA-GC- -5'
29222 5' -57.7 NC_006150.1 + 132183 1.1 0.00335
Target:  5'- uGGCUCACGACGGCAAGGCCGUCGUCGc -3'
miRNA:   3'- -CCGAGUGCUGCCGUUCCGGCAGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.