miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29225 5' -55.5 NC_006150.1 + 109127 0.66 0.973897
Target:  5'- cCCGauUGGCcACCUCCAcGGaGGugUGc -3'
miRNA:   3'- -GGU--ACCGcUGGAGGUuCCaCCugACc -5'
29225 5' -55.5 NC_006150.1 + 43228 0.66 0.973897
Target:  5'- aCCAaaaacGGUGGCCUCCAaaguucgcAGGUGaGgccgagccuuuACUGGa -3'
miRNA:   3'- -GGUa----CCGCUGGAGGU--------UCCAC-C-----------UGACC- -5'
29225 5' -55.5 NC_006150.1 + 140295 0.66 0.968403
Target:  5'- aCgAUGacuaCGGCCUCUAc-GUGGACUGGu -3'
miRNA:   3'- -GgUACc---GCUGGAGGUucCACCUGACC- -5'
29225 5' -55.5 NC_006150.1 + 23309 0.66 0.965368
Target:  5'- uCCAggGGCcGCCUCCAAGGgcgaUGGcCaGGc -3'
miRNA:   3'- -GGUa-CCGcUGGAGGUUCC----ACCuGaCC- -5'
29225 5' -55.5 NC_006150.1 + 36052 0.67 0.958696
Target:  5'- ---cGGCGuCCUCCAgccgAGGcUGGGgaGGa -3'
miRNA:   3'- gguaCCGCuGGAGGU----UCC-ACCUgaCC- -5'
29225 5' -55.5 NC_006150.1 + 135534 0.68 0.928617
Target:  5'- gCCAUGGUG-CCgCCGcgguGGUGGACg-- -3'
miRNA:   3'- -GGUACCGCuGGaGGUu---CCACCUGacc -5'
29225 5' -55.5 NC_006150.1 + 32910 0.68 0.923435
Target:  5'- aCAUuGCGACgUCCAGGGUccuGugUGGc -3'
miRNA:   3'- gGUAcCGCUGgAGGUUCCAc--CugACC- -5'
29225 5' -55.5 NC_006150.1 + 27829 0.69 0.887693
Target:  5'- gCCGUcugGGUGGUCUCCGAGGU--GCUGGg -3'
miRNA:   3'- -GGUA---CCGCUGGAGGUUCCAccUGACC- -5'
29225 5' -55.5 NC_006150.1 + 134724 0.69 0.874062
Target:  5'- uCCAUGGCcACCUCCGAcgcGGaGGAgaUGGc -3'
miRNA:   3'- -GGUACCGcUGGAGGUU---CCaCCUg-ACC- -5'
29225 5' -55.5 NC_006150.1 + 1998 0.72 0.758676
Target:  5'- uCCA-GGgGGCCUCCGcGGUcuGGGCUGa -3'
miRNA:   3'- -GGUaCCgCUGGAGGUuCCA--CCUGACc -5'
29225 5' -55.5 NC_006150.1 + 206656 0.73 0.721002
Target:  5'- -uGUGaGCGGCCUCCAccucGGUGGcUUGGg -3'
miRNA:   3'- ggUAC-CGCUGGAGGUu---CCACCuGACC- -5'
29225 5' -55.5 NC_006150.1 + 130250 0.74 0.672366
Target:  5'- uCCGUGGCuagcACCUgUGAGGUGGaucuGCUGGa -3'
miRNA:   3'- -GGUACCGc---UGGAgGUUCCACC----UGACC- -5'
29225 5' -55.5 NC_006150.1 + 221195 0.74 0.632855
Target:  5'- --cUGGCaGGCaCUCCGGGGUGGcgcGCUGGc -3'
miRNA:   3'- gguACCG-CUG-GAGGUUCCACC---UGACC- -5'
29225 5' -55.5 NC_006150.1 + 135761 1.13 0.002993
Target:  5'- aCCAUGGCGACCUCCAAGGUGGACUGGa -3'
miRNA:   3'- -GGUACCGCUGGAGGUUCCACCUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.