miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
29226	5'	-57.7	NC_006150.1	+	92513	0.67	0.865342
	Target:  5'- -cGUGCCcGCUGAgCAcggcguUCUCGGuCGCu -3' miRNA:   3'- aaCACGGcCGACU-GU------AGAGCCuGCGc -5'
29226	5'	-57.7	NC_006150.1	+	164514	0.67	0.857193
	Target:  5'- --aUGCCGGCguuguguUGACAguaCGGACGCu -3' miRNA:   3'- aacACGGCCG-------ACUGUagaGCCUGCGc -5'
29226	5'	-57.7	NC_006150.1	+	99837	0.68	0.81818
	Target:  5'- -cGUGUuuGCUGACAaggUCUUGGugGUGu -3' miRNA:   3'- aaCACGgcCGACUGU---AGAGCCugCGC- -5'
29226	5'	-57.7	NC_006150.1	+	31704	0.68	0.792351
	Target:  5'- gUUGUGCUGGCggccucuggGACA-CUCGGGCa-- -3' miRNA:   3'- -AACACGGCCGa--------CUGUaGAGCCUGcgc -5'
29226	5'	-57.7	NC_006150.1	+	87814	0.69	0.765295
	Target:  5'- ---aGCCGGcCUGcCGgagCUCGGugGCGc -3' miRNA:   3'- aacaCGGCC-GACuGUa--GAGCCugCGC- -5'
29226	5'	-57.7	NC_006150.1	+	124939	0.71	0.638351
	Target:  5'- cUGUGCUGGCUGAgGUguaUCGGuaucucaugagccACGCGg -3' miRNA:   3'- aACACGGCCGACUgUAg--AGCC-------------UGCGC- -5'
29226	5'	-57.7	NC_006150.1	+	135963	1.07	0.003774
	Target:  5'- gUUGUGCCGGCUGACAUCUCGGACGCGg -3' miRNA:   3'- -AACACGGCCGACUGUAGAGCCUGCGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home