miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29227 3' -50.7 NC_006150.1 + 111537 0.66 0.998999
Target:  5'- aCCAcuGGG-CGGAuggCGGAaaACCUCCa -3'
miRNA:   3'- -GGUucUCUaGCCUua-GCCUg-UGGAGG- -5'
29227 3' -50.7 NC_006150.1 + 105965 0.66 0.998999
Target:  5'- uCCGAGAaGUCuGAGUUGGugucgcgcGgACCUCCa -3'
miRNA:   3'- -GGUUCUcUAGcCUUAGCC--------UgUGGAGG- -5'
29227 3' -50.7 NC_006150.1 + 117046 0.66 0.998878
Target:  5'- aCAGGGGuucGUCGGcGUCcauggccgccaugcgGGGCACgUCCg -3'
miRNA:   3'- gGUUCUC---UAGCCuUAG---------------CCUGUGgAGG- -5'
29227 3' -50.7 NC_006150.1 + 202897 0.67 0.998548
Target:  5'- cUCGGGcGGUUGuGGcgCGGGCACUUCUu -3'
miRNA:   3'- -GGUUCuCUAGC-CUuaGCCUGUGGAGG- -5'
29227 3' -50.7 NC_006150.1 + 29580 0.67 0.997937
Target:  5'- uCCGuGAGGagCGG-AUCGGuACuGCCUCCc -3'
miRNA:   3'- -GGUuCUCUa-GCCuUAGCC-UG-UGGAGG- -5'
29227 3' -50.7 NC_006150.1 + 140690 0.67 0.997559
Target:  5'- aCGAGAGGUUGaGAAUCaaaGCAUCUUCg -3'
miRNA:   3'- gGUUCUCUAGC-CUUAGcc-UGUGGAGG- -5'
29227 3' -50.7 NC_006150.1 + 90898 0.67 0.997559
Target:  5'- cUCAGGAGAgcccgacUGGGucgCGGcCAUCUCCg -3'
miRNA:   3'- -GGUUCUCUa------GCCUua-GCCuGUGGAGG- -5'
29227 3' -50.7 NC_006150.1 + 117917 0.68 0.996061
Target:  5'- gCCAcAGccGGGUCGG--UCGGcACGCCUCg -3'
miRNA:   3'- -GGU-UC--UCUAGCCuuAGCC-UGUGGAGg -5'
29227 3' -50.7 NC_006150.1 + 118113 0.68 0.99542
Target:  5'- aCAGGAGAgcauggcCGGGAUagccaGACGCCUCa -3'
miRNA:   3'- gGUUCUCUa------GCCUUAgc---CUGUGGAGg -5'
29227 3' -50.7 NC_006150.1 + 160696 0.68 0.993882
Target:  5'- cCCuuauGGGGGUUGGGcuauaGGAC-CCUCCu -3'
miRNA:   3'- -GGu---UCUCUAGCCUuag--CCUGuGGAGG- -5'
29227 3' -50.7 NC_006150.1 + 68594 0.69 0.991953
Target:  5'- aUCAAG---UCGGAcUCGGGCACgUCUa -3'
miRNA:   3'- -GGUUCucuAGCCUuAGCCUGUGgAGG- -5'
29227 3' -50.7 NC_006150.1 + 80486 0.7 0.985009
Target:  5'- aCCGAGAGAaCGaGuucUCGGACAUguUUCCa -3'
miRNA:   3'- -GGUUCUCUaGC-Cuu-AGCCUGUG--GAGG- -5'
29227 3' -50.7 NC_006150.1 + 210665 0.71 0.974227
Target:  5'- gUCAugcGGcgCGGggUCGGACACCg-- -3'
miRNA:   3'- -GGUuc-UCuaGCCuuAGCCUGUGGagg -5'
29227 3' -50.7 NC_006150.1 + 10127 0.71 0.971526
Target:  5'- cCCuGGGGAUCGGGAgugaaGGu--CCUCCg -3'
miRNA:   3'- -GGuUCUCUAGCCUUag---CCuguGGAGG- -5'
29227 3' -50.7 NC_006150.1 + 93075 0.71 0.965523
Target:  5'- gCA--GGAUCGGAGUCGGGgcguccagaUACCUCg -3'
miRNA:   3'- gGUucUCUAGCCUUAGCCU---------GUGGAGg -5'
29227 3' -50.7 NC_006150.1 + 148563 0.73 0.927645
Target:  5'- uUCAAGAcGcgCGGAucaCGGuCACCUCCc -3'
miRNA:   3'- -GGUUCU-CuaGCCUua-GCCuGUGGAGG- -5'
29227 3' -50.7 NC_006150.1 + 83033 0.73 0.922278
Target:  5'- gCGGGAGAUgGGGguGUCGGACuuUUCCc -3'
miRNA:   3'- gGUUCUCUAgCCU--UAGCCUGugGAGG- -5'
29227 3' -50.7 NC_006150.1 + 207144 0.77 0.77939
Target:  5'- gCCGAGAGGUUGGA----GAUGCCUCCg -3'
miRNA:   3'- -GGUUCUCUAGCCUuagcCUGUGGAGG- -5'
29227 3' -50.7 NC_006150.1 + 142463 1.15 0.007694
Target:  5'- gCCAAGAGAUCGGAAUCGGACACCUCCu -3'
miRNA:   3'- -GGUUCUCUAGCCUUAGCCUGUGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.