Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29227 | 5' | -50.4 | NC_006150.1 | + | 84865 | 0.73 | 0.918269 |
Target: 5'- gUUGUAGGUGUCCUCAcaCAaCCCCGu -3' miRNA: 3'- -AGCAUUCAUAGGAGUagGUaGGGGUc -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 160946 | 0.66 | 0.999003 |
Target: 5'- uUCuauGGUGcUCCUCcgaCGUCCCCAGg -3' miRNA: 3'- -AGcauUCAU-AGGAGuagGUAGGGGUC- -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 101626 | 0.67 | 0.997526 |
Target: 5'- cUCGaGGGgauUCCUgGUCCGucaUCCCCAc -3' miRNA: 3'- -AGCaUUCau-AGGAgUAGGU---AGGGGUc -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 49385 | 0.67 | 0.997526 |
Target: 5'- ---aAAGUAUCCcuaagaUCGUCCAUgCCCGa -3' miRNA: 3'- agcaUUCAUAGG------AGUAGGUAgGGGUc -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 189579 | 0.67 | 0.995974 |
Target: 5'- gUCGUAGGUAUagaaCAUCCAUCUgguggCCAGc -3' miRNA: 3'- -AGCAUUCAUAgga-GUAGGUAGG-----GGUC- -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 55907 | 0.68 | 0.993704 |
Target: 5'- -------cGUCCUCGUCCGUgCCCAa -3' miRNA: 3'- agcauucaUAGGAGUAGGUAgGGGUc -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 87514 | 0.7 | 0.975678 |
Target: 5'- uUCGUGGGUcugggGUCC-CuuuuUCCAUCCCCc- -3' miRNA: 3'- -AGCAUUCA-----UAGGaGu---AGGUAGGGGuc -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 155504 | 0.71 | 0.967122 |
Target: 5'- -------gGUCCUCAUCCAUCUUCAGc -3' miRNA: 3'- agcauucaUAGGAGUAGGUAGGGGUC- -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 142419 | 1.09 | 0.013885 |
Target: 5'- aUCGUAAGUAUCCUCAUCCAUCCCCAGc -3' miRNA: 3'- -AGCAUUCAUAGGAGUAGGUAGGGGUC- -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 132505 | 0.69 | 0.984394 |
Target: 5'- aUCGUAccagGUCCUCGUucUCAUCCCCc- -3' miRNA: 3'- -AGCAUuca-UAGGAGUA--GGUAGGGGuc -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 201035 | 0.68 | 0.994473 |
Target: 5'- -aGUGAGUcaucucuGUCCUCAgauacccaugaUCCAccacCCCCAGa -3' miRNA: 3'- agCAUUCA-------UAGGAGU-----------AGGUa---GGGGUC- -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 81595 | 0.67 | 0.997526 |
Target: 5'- uUCGUGGGgucgGUCUUUG-CCGcCCCCAGc -3' miRNA: 3'- -AGCAUUCa---UAGGAGUaGGUaGGGGUC- -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 153336 | 0.67 | 0.997916 |
Target: 5'- aCGUGAaccaUGUUaggaUCAUCCAUCCCCc- -3' miRNA: 3'- aGCAUUc---AUAGg---AGUAGGUAGGGGuc -5' |
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29227 | 5' | -50.4 | NC_006150.1 | + | 81700 | 0.66 | 0.998543 |
Target: 5'- cUGUGcAGgGUCCUCAUgaaCGUCCUCAGc -3' miRNA: 3'- aGCAU-UCaUAGGAGUAg--GUAGGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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