miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29228 5' -56.5 NC_006150.1 + 152393 0.66 0.941467
Target:  5'- uUGAagGCGGccacGGCCugCGGGguGuGCg -3'
miRNA:   3'- -ACUuaCGCCa---CUGGugGCCCguU-CGa -5'
29228 5' -56.5 NC_006150.1 + 183875 0.66 0.926836
Target:  5'- gUGGGaGCGGUGGuuGCagCGGcGCAGGCa -3'
miRNA:   3'- -ACUUaCGCCACUggUG--GCC-CGUUCGa -5'
29228 5' -56.5 NC_006150.1 + 111649 0.66 0.926312
Target:  5'- -cGAUGCuGGUcGACCAaacgcgcCUGGGCAGGUUc -3'
miRNA:   3'- acUUACG-CCA-CUGGU-------GGCCCGUUCGA- -5'
29228 5' -56.5 NC_006150.1 + 101899 0.66 0.921499
Target:  5'- aGGAaGUGGUGGCCaACCaGGUAAGa- -3'
miRNA:   3'- aCUUaCGCCACUGG-UGGcCCGUUCga -5'
29228 5' -56.5 NC_006150.1 + 180237 0.67 0.884709
Target:  5'- --cAUGUGGUGGCUGCUGGcCAAGUa -3'
miRNA:   3'- acuUACGCCACUGGUGGCCcGUUCGa -5'
29228 5' -56.5 NC_006150.1 + 55378 0.67 0.884709
Target:  5'- aUGAacuGUGCGGUGACCaagcuGCCGuGCAcgguGCg -3'
miRNA:   3'- -ACU---UACGCCACUGG-----UGGCcCGUu---CGa -5'
29228 5' -56.5 NC_006150.1 + 55747 0.67 0.877805
Target:  5'- aGggUGCGGaUGACCGagCGGaGCu-GCUg -3'
miRNA:   3'- aCuuACGCC-ACUGGUg-GCC-CGuuCGA- -5'
29228 5' -56.5 NC_006150.1 + 170428 0.69 0.823878
Target:  5'- --cGUGCGGUuucgaaaaGGCUucgGCCGGGUGAGCg -3'
miRNA:   3'- acuUACGCCA--------CUGG---UGGCCCGUUCGa -5'
29228 5' -56.5 NC_006150.1 + 150127 0.69 0.806858
Target:  5'- cGGAUGCauagacgacuGGUG-CCGCCGaGGCGuGCUg -3'
miRNA:   3'- aCUUACG----------CCACuGGUGGC-CCGUuCGA- -5'
29228 5' -56.5 NC_006150.1 + 149966 0.71 0.723689
Target:  5'- cGAggGCGGcgcGACCugcCCGGGCAGGgUg -3'
miRNA:   3'- aCUuaCGCCa--CUGGu--GGCCCGUUCgA- -5'
29228 5' -56.5 NC_006150.1 + 221183 0.71 0.704151
Target:  5'- cUGAAUGCGGgucUGGCaggcacuCCGGGguGGCg -3'
miRNA:   3'- -ACUUACGCC---ACUGgu-----GGCCCguUCGa -5'
29228 5' -56.5 NC_006150.1 + 92445 0.72 0.66444
Target:  5'- cGAGgagGCGGUGACCgugucGCCGGccaCGAGCa -3'
miRNA:   3'- aCUUa--CGCCACUGG-----UGGCCc--GUUCGa -5'
29228 5' -56.5 NC_006150.1 + 107676 0.73 0.564453
Target:  5'- cGAGgucguUGUGGUcGGCCGCUGGGgGAGCg -3'
miRNA:   3'- aCUU-----ACGCCA-CUGGUGGCCCgUUCGa -5'
29228 5' -56.5 NC_006150.1 + 142805 1.07 0.004642
Target:  5'- gUGAAUGCGGUGACCACCGGGCAAGCUc -3'
miRNA:   3'- -ACUUACGCCACUGGUGGCCCGUUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.