miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29229 5' -51.9 NC_006150.1 + 180849 0.66 0.995615
Target:  5'- aGCAACagCGGCGUcGGCgucgcuCGGACAGGGg- -3'
miRNA:   3'- -UGUUG--GUUGCAuUCG------GUCUGUCCCac -5'
29229 5' -51.9 NC_006150.1 + 72262 0.66 0.994825
Target:  5'- cCAGCCggUGUAAGCguaauugCGGGaaguGGGGUGg -3'
miRNA:   3'- uGUUGGuuGCAUUCG-------GUCUg---UCCCAC- -5'
29229 5' -51.9 NC_006150.1 + 132230 0.66 0.993195
Target:  5'- cCAACCGcaaguAUGUGGGaCgAGACGGGGg- -3'
miRNA:   3'- uGUUGGU-----UGCAUUC-GgUCUGUCCCac -5'
29229 5' -51.9 NC_006150.1 + 123183 0.67 0.989808
Target:  5'- --uACCGGCGUGAuGCCGGuaauagcgucGCAGGGc- -3'
miRNA:   3'- uguUGGUUGCAUU-CGGUC----------UGUCCCac -5'
29229 5' -51.9 NC_006150.1 + 94282 0.67 0.989808
Target:  5'- cGCGcACaGACGUAgcAGuCCGGACAGGGa- -3'
miRNA:   3'- -UGU-UGgUUGCAU--UC-GGUCUGUCCCac -5'
29229 5' -51.9 NC_006150.1 + 157225 0.68 0.981396
Target:  5'- aGCAugC-ACGUGGGa-GGugAGGGUGg -3'
miRNA:   3'- -UGUugGuUGCAUUCggUCugUCCCAC- -5'
29229 5' -51.9 NC_006150.1 + 149970 0.68 0.974316
Target:  5'- gGCGGCgCGACcu--GcCCGGGCAGGGUGc -3'
miRNA:   3'- -UGUUG-GUUGcauuC-GGUCUGUCCCAC- -5'
29229 5' -51.9 NC_006150.1 + 170227 0.69 0.968618
Target:  5'- gGCGAUCaccaucguaAugGUGAGCCuGACgccgAGGGUGa -3'
miRNA:   3'- -UGUUGG---------UugCAUUCGGuCUG----UCCCAC- -5'
29229 5' -51.9 NC_006150.1 + 65732 0.69 0.965455
Target:  5'- gACuACCAACGcuaccGGGCCGGACAGcGGc- -3'
miRNA:   3'- -UGuUGGUUGCa----UUCGGUCUGUC-CCac -5'
29229 5' -51.9 NC_006150.1 + 69088 0.69 0.965127
Target:  5'- gACAuCCgAACGUAuuuAGCCAGcaugguguucgucACGGGGUGu -3'
miRNA:   3'- -UGUuGG-UUGCAU---UCGGUC-------------UGUCCCAC- -5'
29229 5' -51.9 NC_006150.1 + 58115 0.69 0.962075
Target:  5'- aACGGCCGAUGagaAGGUCAGAaCGGGGa- -3'
miRNA:   3'- -UGUUGGUUGCa--UUCGGUCU-GUCCCac -5'
29229 5' -51.9 NC_006150.1 + 93106 0.7 0.948023
Target:  5'- --cGCCA-CGUAAaugguauccgaucacGUCAGACAGGGUGc -3'
miRNA:   3'- uguUGGUuGCAUU---------------CGGUCUGUCCCAC- -5'
29229 5' -51.9 NC_006150.1 + 80518 0.7 0.945832
Target:  5'- aGCAgaaCAACGUguuucgcGAGCCAGACAGuGUGa -3'
miRNA:   3'- -UGUug-GUUGCA-------UUCGGUCUGUCcCAC- -5'
29229 5' -51.9 NC_006150.1 + 218023 0.7 0.941735
Target:  5'- aACGGCCGGaucaucugAGGCCAGACAGGcUGa -3'
miRNA:   3'- -UGUUGGUUgca-----UUCGGUCUGUCCcAC- -5'
29229 5' -51.9 NC_006150.1 + 131940 0.71 0.909393
Target:  5'- gACGGCCuugccguCGUGAGCCAGACGGuuGGc- -3'
miRNA:   3'- -UGUUGGuu-----GCAUUCGGUCUGUC--CCac -5'
29229 5' -51.9 NC_006150.1 + 62450 0.72 0.896671
Target:  5'- cACAGCCGAUucGGGCCacGGGCGGGGa- -3'
miRNA:   3'- -UGUUGGUUGcaUUCGG--UCUGUCCCac -5'
29229 5' -51.9 NC_006150.1 + 143275 0.97 0.053856
Target:  5'- aACAACCAAUGcAAGCCAGACAGGGUGg -3'
miRNA:   3'- -UGUUGGUUGCaUUCGGUCUGUCCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.