miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2923 5' -51.8 NC_001493.1 + 114495 0.66 0.973186
Target:  5'- cUCUCGGGAucGAGgaaGCCGCCGgCg -3'
miRNA:   3'- aAGAGCUUUuuCUCga-CGGUGGUgGa -5'
2923 5' -51.8 NC_001493.1 + 31524 0.66 0.967013
Target:  5'- -aCUCGAAc-GGAcGCUGCaACCGCCc -3'
miRNA:   3'- aaGAGCUUuuUCU-CGACGgUGGUGGa -5'
2923 5' -51.8 NC_001493.1 + 46683 0.67 0.951789
Target:  5'- --aUCGc-GGAGAGCgcaugGCCACCAUCg -3'
miRNA:   3'- aagAGCuuUUUCUCGa----CGGUGGUGGa -5'
2923 5' -51.8 NC_001493.1 + 65255 0.67 0.947349
Target:  5'- aUUUUCGGuaacGAGGGCaGCCGCCAUUa -3'
miRNA:   3'- -AAGAGCUuu--UUCUCGaCGGUGGUGGa -5'
2923 5' -51.8 NC_001493.1 + 46016 0.67 0.942648
Target:  5'- aUCUCGccGAGGAGAgGCUGUCGCgCACa- -3'
miRNA:   3'- aAGAGC--UUUUUCU-CGACGGUG-GUGga -5'
2923 5' -51.8 NC_001493.1 + 5865 0.68 0.931912
Target:  5'- aUCaUCGAGAGggcguuucccgggGGAGCUGCCACUcUCg -3'
miRNA:   3'- aAG-AGCUUUU-------------UCUCGACGGUGGuGGa -5'
2923 5' -51.8 NC_001493.1 + 6064 0.68 0.931912
Target:  5'- aUCaUCGAGAGgacguuucccgggGGAGCUGCCACUcUCg -3'
miRNA:   3'- aAG-AGCUUUU-------------UCUCGACGGUGGuGGa -5'
2923 5' -51.8 NC_001493.1 + 121419 0.68 0.931912
Target:  5'- aUCaUCGAGAGggcguuucccgggGGAGCUGCCACUcUCg -3'
miRNA:   3'- aAG-AGCUUUU-------------UCUCGACGGUGGuGGa -5'
2923 5' -51.8 NC_001493.1 + 121618 0.68 0.931912
Target:  5'- aUCaUCGAGAGgacguuucccgggGGAGCUGCCACUcUCg -3'
miRNA:   3'- aAG-AGCUUUU-------------UCUCGACGGUGGuGGa -5'
2923 5' -51.8 NC_001493.1 + 31569 0.68 0.926949
Target:  5'- --aUCGGGAAgggaGGGGUUGgCGCCGCCa -3'
miRNA:   3'- aagAGCUUUU----UCUCGACgGUGGUGGa -5'
2923 5' -51.8 NC_001493.1 + 23544 0.69 0.873419
Target:  5'- cUCUCGGAccAGAuGCUgGCCgagGCCACCg -3'
miRNA:   3'- aAGAGCUUuuUCU-CGA-CGG---UGGUGGa -5'
2923 5' -51.8 NC_001493.1 + 50500 0.7 0.849219
Target:  5'- ---cCGAGAAGGAGCccagcaCCACCACCa -3'
miRNA:   3'- aagaGCUUUUUCUCGac----GGUGGUGGa -5'
2923 5' -51.8 NC_001493.1 + 19947 0.71 0.823033
Target:  5'- gUCcCGAAGAuguucuGGGGCUGCUACCcGCCg -3'
miRNA:   3'- aAGaGCUUUU------UCUCGACGGUGG-UGGa -5'
2923 5' -51.8 NC_001493.1 + 29212 0.72 0.755584
Target:  5'- --aUCGAGAAgcugaaggugauGGAGCUggaaGCCGCCGCCa -3'
miRNA:   3'- aagAGCUUUU------------UCUCGA----CGGUGGUGGa -5'
2923 5' -51.8 NC_001493.1 + 130026 0.72 0.735051
Target:  5'- -gCUCGu---AGAGCgcgucUGCCGCCACCa -3'
miRNA:   3'- aaGAGCuuuuUCUCG-----ACGGUGGUGGa -5'
2923 5' -51.8 NC_001493.1 + 62066 0.73 0.670313
Target:  5'- --aUCGAGAguuuaucAGGGGCUGUCACUACCg -3'
miRNA:   3'- aagAGCUUU-------UUCUCGACGGUGGUGGa -5'
2923 5' -51.8 NC_001493.1 + 14471 0.74 0.617247
Target:  5'- -gCUCGAGAgcGcGuCUGCCGCCACCa -3'
miRNA:   3'- aaGAGCUUUuuCuC-GACGGUGGUGGa -5'
2923 5' -51.8 NC_001493.1 + 69570 0.75 0.595612
Target:  5'- uUUCUUGGAGGGGGGacuCUGCCGCgGCCUc -3'
miRNA:   3'- -AAGAGCUUUUUCUC---GACGGUGgUGGA- -5'
2923 5' -51.8 NC_001493.1 + 51206 1.05 0.008807
Target:  5'- gUUCUCGAAAAAGAGCUGCCACCACCUu -3'
miRNA:   3'- -AAGAGCUUUUUCUCGACGGUGGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.