miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29230 5' -47.1 NC_006150.1 + 110468 0.66 0.99999
Target:  5'- --aUuuGCGAcguuUAUGCUccacaGCGGCAUGGGg -3'
miRNA:   3'- auaAggCGCU----AUAUGG-----CGCUGUAUUC- -5'
29230 5' -47.1 NC_006150.1 + 190316 0.66 0.999986
Target:  5'- -uUUCCGUGuuaaaacACCGgGACAUGAa -3'
miRNA:   3'- auAAGGCGCuaua---UGGCgCUGUAUUc -5'
29230 5' -47.1 NC_006150.1 + 147269 0.66 0.99998
Target:  5'- ---gUgGCGAUAUGCggcgauaguCGCGACAUGAc -3'
miRNA:   3'- auaaGgCGCUAUAUG---------GCGCUGUAUUc -5'
29230 5' -47.1 NC_006150.1 + 146962 0.66 0.999973
Target:  5'- ---gUCGCGGUAUAUCGCGGaAUAu- -3'
miRNA:   3'- auaaGGCGCUAUAUGGCGCUgUAUuc -5'
29230 5' -47.1 NC_006150.1 + 32104 0.66 0.999973
Target:  5'- gAUUCCGCGuuacAUAaCGCGACAc--- -3'
miRNA:   3'- aUAAGGCGCua--UAUgGCGCUGUauuc -5'
29230 5' -47.1 NC_006150.1 + 74202 0.66 0.999963
Target:  5'- ---aCCGCGAUcgGCUGC-ACAUGc- -3'
miRNA:   3'- auaaGGCGCUAuaUGGCGcUGUAUuc -5'
29230 5' -47.1 NC_006150.1 + 146872 0.67 0.999951
Target:  5'- ---aUCGCGAUAUAUCGCGGa----- -3'
miRNA:   3'- auaaGGCGCUAUAUGGCGCUguauuc -5'
29230 5' -47.1 NC_006150.1 + 104151 0.67 0.999935
Target:  5'- aAUUCCaGUGucAUAUGCCGCaaucGACAUGAu -3'
miRNA:   3'- aUAAGG-CGC--UAUAUGGCG----CUGUAUUc -5'
29230 5' -47.1 NC_006150.1 + 85075 0.67 0.999935
Target:  5'- ---cUCGCGAUGguCCGCGGCGUu-- -3'
miRNA:   3'- auaaGGCGCUAUauGGCGCUGUAuuc -5'
29230 5' -47.1 NC_006150.1 + 70188 0.67 0.999935
Target:  5'- --gUCCGCGGUaccugGUACCGCuGCGa--- -3'
miRNA:   3'- auaAGGCGCUA-----UAUGGCGcUGUauuc -5'
29230 5' -47.1 NC_006150.1 + 421 0.67 0.999888
Target:  5'- ---gCCGCGGUGUcACUGCGGCc---- -3'
miRNA:   3'- auaaGGCGCUAUA-UGGCGCUGuauuc -5'
29230 5' -47.1 NC_006150.1 + 147220 0.67 0.999888
Target:  5'- ---aCCGCGAUAUACUGCGn------ -3'
miRNA:   3'- auaaGGCGCUAUAUGGCGCuguauuc -5'
29230 5' -47.1 NC_006150.1 + 146992 0.68 0.999696
Target:  5'- ---aUCGCGGuUAUGUCGCGACAUAAc -3'
miRNA:   3'- auaaGGCGCU-AUAUGGCGCUGUAUUc -5'
29230 5' -47.1 NC_006150.1 + 91065 0.7 0.998651
Target:  5'- ---cCCGCGGUgauguGUGCUG-GACAUGAGa -3'
miRNA:   3'- auaaGGCGCUA-----UAUGGCgCUGUAUUC- -5'
29230 5' -47.1 NC_006150.1 + 62913 0.7 0.997216
Target:  5'- cUAUgCCGCGGUGUACCaguGCGACu---- -3'
miRNA:   3'- -AUAaGGCGCUAUAUGG---CGCUGuauuc -5'
29230 5' -47.1 NC_006150.1 + 184912 0.76 0.94202
Target:  5'- ---gUUGUGGUAUACCGCGACAaAGGa -3'
miRNA:   3'- auaaGGCGCUAUAUGGCGCUGUaUUC- -5'
29230 5' -47.1 NC_006150.1 + 147111 0.94 0.203762
Target:  5'- --aUCCGCGAUAUAUCGCGAUAUAAGa -3'
miRNA:   3'- auaAGGCGCUAUAUGGCGCUGUAUUC- -5'
29230 5' -47.1 NC_006150.1 + 147204 1.09 0.027787
Target:  5'- aUAUUCCGCGAUAUACCGCGACAUAAGg -3'
miRNA:   3'- -AUAAGGCGCUAUAUGGCGCUGUAUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.