miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29231 3' -58.8 NC_006150.1 + 88328 0.67 0.822064
Target:  5'- gCCCCugCACCccaGCugGGCCucgcgacGCCCc-- -3'
miRNA:   3'- gGGGGugGUGG---UGugCUGG-------UGGGauu -5'
29231 3' -58.8 NC_006150.1 + 32429 0.67 0.81463
Target:  5'- gUCCUCGCCACaUACGCucauCCGCCCUc- -3'
miRNA:   3'- -GGGGGUGGUG-GUGUGcu--GGUGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 68810 0.67 0.81463
Target:  5'- cCCCCCAUCACCACACucaCACa---- -3'
miRNA:   3'- -GGGGGUGGUGGUGUGcugGUGggauu -5'
29231 3' -58.8 NC_006150.1 + 216067 0.67 0.81463
Target:  5'- gUCCCCGCaCGCCACugugaGAUCACCg--- -3'
miRNA:   3'- -GGGGGUG-GUGGUGug---CUGGUGGgauu -5'
29231 3' -58.8 NC_006150.1 + 58554 0.67 0.812124
Target:  5'- aCCaUCACCACCcucggaucccuccuGCAUGACCGCCUcGAg -3'
miRNA:   3'- gGG-GGUGGUGG--------------UGUGCUGGUGGGaUU- -5'
29231 3' -58.8 NC_006150.1 + 182351 0.67 0.806224
Target:  5'- gCCCgGCCucccuCCuguGCGACCACCCg-- -3'
miRNA:   3'- gGGGgUGGu----GGug-UGCUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 161681 0.68 0.801111
Target:  5'- aCCCCACC-CCAaacuuggcacggugcCAaguCGACCACCCc-- -3'
miRNA:   3'- gGGGGUGGuGGU---------------GU---GCUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 91921 0.68 0.797674
Target:  5'- aCCCgUACgACCcguACAUGGCCACCgUAGc -3'
miRNA:   3'- -GGGgGUGgUGG---UGUGCUGGUGGgAUU- -5'
29231 3' -58.8 NC_006150.1 + 1501 0.68 0.797674
Target:  5'- cCCUCCGCCGCCAC-CcACuCACCUg-- -3'
miRNA:   3'- -GGGGGUGGUGGUGuGcUG-GUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 24799 0.68 0.797674
Target:  5'- gUCCCGCC-CCA-GC-ACCACCCUAAc -3'
miRNA:   3'- gGGGGUGGuGGUgUGcUGGUGGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 4043 0.68 0.797674
Target:  5'- uCCCCCACCACCuggaACACGuggaugguCCACa---- -3'
miRNA:   3'- -GGGGGUGGUGG----UGUGCu-------GGUGggauu -5'
29231 3' -58.8 NC_006150.1 + 363 0.68 0.788987
Target:  5'- uCCCCCucCCuCCACGCGAgCCGCgCa-- -3'
miRNA:   3'- -GGGGGu-GGuGGUGUGCU-GGUGgGauu -5'
29231 3' -58.8 NC_006150.1 + 167923 0.68 0.780169
Target:  5'- gCCUCCugCGCCG-ACGACCAUggggCCUGc -3'
miRNA:   3'- -GGGGGugGUGGUgUGCUGGUG----GGAUu -5'
29231 3' -58.8 NC_006150.1 + 111534 0.68 0.780169
Target:  5'- gCgCCCACgGCgACA-GACUACCCUAc -3'
miRNA:   3'- -GgGGGUGgUGgUGUgCUGGUGGGAUu -5'
29231 3' -58.8 NC_006150.1 + 45054 0.68 0.780169
Target:  5'- aCgCCgGCUgguGCCACACG-CCACUCUGAu -3'
miRNA:   3'- -GgGGgUGG---UGGUGUGCuGGUGGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 109564 0.68 0.77033
Target:  5'- cCUCCCACCAgcucucacauucuCCGCAUcaugGAUCGCCCUc- -3'
miRNA:   3'- -GGGGGUGGU-------------GGUGUG----CUGGUGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 92533 0.68 0.762177
Target:  5'- aCUCCCACCACCGCcaGCaucCCGCCUc-- -3'
miRNA:   3'- -GGGGGUGGUGGUG--UGcu-GGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 183335 0.69 0.743761
Target:  5'- cCCCCCuCCACCGC-CucCUACCCa-- -3'
miRNA:   3'- -GGGGGuGGUGGUGuGcuGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 132801 0.69 0.743761
Target:  5'- cCUCUCGCUcuuGgCACugGGCCACCCUc- -3'
miRNA:   3'- -GGGGGUGG---UgGUGugCUGGUGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 701 0.69 0.743761
Target:  5'- cCCCCCGCCGCgACccccgGGCCcCCCUc- -3'
miRNA:   3'- -GGGGGUGGUGgUGug---CUGGuGGGAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.