miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29231 5' -54.8 NC_006150.1 + 149926 0.66 0.973687
Target:  5'- ---cGGcCACGGUGCgAcacAGuUCGCGGUAc -3'
miRNA:   3'- gcaaCC-GUGCCACGgU---UC-AGCGCUAU- -5'
29231 5' -54.8 NC_006150.1 + 173282 0.66 0.970955
Target:  5'- uGUUGGCACGGaGCCuucuGGUaCGUa--- -3'
miRNA:   3'- gCAACCGUGCCaCGGu---UCA-GCGcuau -5'
29231 5' -54.8 NC_006150.1 + 217466 0.66 0.957994
Target:  5'- aGUUGGuUugGGUGCaCGAGUCaUGAa- -3'
miRNA:   3'- gCAACC-GugCCACG-GUUCAGcGCUau -5'
29231 5' -54.8 NC_006150.1 + 13236 0.66 0.957994
Target:  5'- ---cGGUaACGGUGCCAAGUggaggcgGCGGUGu -3'
miRNA:   3'- gcaaCCG-UGCCACGGUUCAg------CGCUAU- -5'
29231 5' -54.8 NC_006150.1 + 162117 0.67 0.95022
Target:  5'- -cUUGGCAUGGUGCCAAaaUCcCGAUu -3'
miRNA:   3'- gcAACCGUGCCACGGUUc-AGcGCUAu -5'
29231 5' -54.8 NC_006150.1 + 45523 0.67 0.941542
Target:  5'- ---aGGUGCGGcUGgCAAGUUGCGAa- -3'
miRNA:   3'- gcaaCCGUGCC-ACgGUUCAGCGCUau -5'
29231 5' -54.8 NC_006150.1 + 114009 0.69 0.895596
Target:  5'- gGUUGGCgACGGcgcauagcaagccuUGCUcuucgGGGUCGCGGUGc -3'
miRNA:   3'- gCAACCG-UGCC--------------ACGG-----UUCAGCGCUAU- -5'
29231 5' -54.8 NC_006150.1 + 183506 0.69 0.890996
Target:  5'- gCGUgGGCucCGGUGCgGGGU-GCGAUAg -3'
miRNA:   3'- -GCAaCCGu-GCCACGgUUCAgCGCUAU- -5'
29231 5' -54.8 NC_006150.1 + 161931 0.69 0.884235
Target:  5'- -cUUGGCACcGUGCCAAGuUUGgGGUGg -3'
miRNA:   3'- gcAACCGUGcCACGGUUC-AGCgCUAU- -5'
29231 5' -54.8 NC_006150.1 + 117115 0.69 0.870062
Target:  5'- uGUUGGCgguguugaGCGGcUGCCG-GUCgGCGAUGa -3'
miRNA:   3'- gCAACCG--------UGCC-ACGGUuCAG-CGCUAU- -5'
29231 5' -54.8 NC_006150.1 + 162274 0.7 0.862659
Target:  5'- --cUGGCACGGUGCCAAGaaauuuuggCuCGGUGc -3'
miRNA:   3'- gcaACCGUGCCACGGUUCa--------GcGCUAU- -5'
29231 5' -54.8 NC_006150.1 + 161725 0.7 0.831075
Target:  5'- -aUUGGCAUGGUGCCAAGUUuuuuugGCu--- -3'
miRNA:   3'- gcAACCGUGCCACGGUUCAG------CGcuau -5'
29231 5' -54.8 NC_006150.1 + 162038 0.72 0.759928
Target:  5'- -cUUGGCACcGUGCCAGGUCG-GAc- -3'
miRNA:   3'- gcAACCGUGcCACGGUUCAGCgCUau -5'
29231 5' -54.8 NC_006150.1 + 161901 0.8 0.323818
Target:  5'- -cUUGGCAUGGUGCCAAGUC-CGAc- -3'
miRNA:   3'- gcAACCGUGCCACGGUUCAGcGCUau -5'
29231 5' -54.8 NC_006150.1 + 161694 0.81 0.295662
Target:  5'- -cUUGGCACGGUGCCAAGUCGa---- -3'
miRNA:   3'- gcAACCGUGCCACGGUUCAGCgcuau -5'
29231 5' -54.8 NC_006150.1 + 184260 0.82 0.257057
Target:  5'- aGUUGGCAUGGcGCCGAGUCGCuGAc- -3'
miRNA:   3'- gCAACCGUGCCaCGGUUCAGCG-CUau -5'
29231 5' -54.8 NC_006150.1 + 147296 1.07 0.007008
Target:  5'- uCGUUGGCACGGUGCCAAGUCGCGAUAg -3'
miRNA:   3'- -GCAACCGUGCCACGGUUCAGCGCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.