Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29232 | 3' | -58 | NC_006150.1 | + | 148619 | 1 | 0.015093 |
Target: 5'- gCGGACGCGGAACGGCCCG-CUUACCGu -3' miRNA: 3'- -GCCUGCGCCUUGCCGGGCuGAAUGGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 168663 | 0.73 | 0.565081 |
Target: 5'- --cACGCGGGuGCGGCggaCCGACUUGCCa -3' miRNA: 3'- gccUGCGCCU-UGCCG---GGCUGAAUGGc -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 118269 | 0.73 | 0.565081 |
Target: 5'- cCGcGAcCGCGGGcucgaGCGGCUCGACUUugUGg -3' miRNA: 3'- -GC-CU-GCGCCU-----UGCCGGGCUGAAugGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 149815 | 0.71 | 0.690406 |
Target: 5'- -aGugGCGGuGCGaGCCUGGCUgGCCGc -3' miRNA: 3'- gcCugCGCCuUGC-CGGGCUGAaUGGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 53362 | 0.71 | 0.690406 |
Target: 5'- aGGACGCGGAGgGacuucCCCGACg-ACCGc -3' miRNA: 3'- gCCUGCGCCUUgCc----GGGCUGaaUGGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 119526 | 0.71 | 0.703742 |
Target: 5'- uGGACGCGGAGCGcGUUCGcggcgucuuuggcgcGCUcUACCGc -3' miRNA: 3'- gCCUGCGCCUUGC-CGGGC---------------UGA-AUGGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 170857 | 0.7 | 0.755815 |
Target: 5'- gCGGACGUGGGAUGGgCCGgugugacgcaGCUUgugaaGCCa -3' miRNA: 3'- -GCCUGCGCCUUGCCgGGC----------UGAA-----UGGc -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 120231 | 0.7 | 0.76483 |
Target: 5'- gGGACGCGucauGAUGGCCCuacGGCUgcCCGa -3' miRNA: 3'- gCCUGCGCc---UUGCCGGG---CUGAauGGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 52907 | 0.69 | 0.782536 |
Target: 5'- uGGugGUGGGAU-GCCUGACUcUGCUGu -3' miRNA: 3'- gCCugCGCCUUGcCGGGCUGA-AUGGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 88267 | 0.69 | 0.816439 |
Target: 5'- gGGGgGCGGAGCGugcGCUCGGCUgggcgGCaCGg -3' miRNA: 3'- gCCUgCGCCUUGC---CGGGCUGAa----UG-GC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 88407 | 0.68 | 0.824557 |
Target: 5'- gCGGuGCGCGG-ACGGCCgCG-CUgggucUGCCGc -3' miRNA: 3'- -GCC-UGCGCCuUGCCGG-GCuGA-----AUGGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 220115 | 0.68 | 0.840316 |
Target: 5'- aCGGuuGUGGAggACGGCCCGGagUUugCa -3' miRNA: 3'- -GCCugCGCCU--UGCCGGGCUg-AAugGc -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 48201 | 0.68 | 0.840316 |
Target: 5'- cCGGACGCGGAAUGGgUCG---UGCUa -3' miRNA: 3'- -GCCUGCGCCUUGCCgGGCugaAUGGc -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 109113 | 0.68 | 0.862671 |
Target: 5'- --aGCGCaGAugACGGCCCGAUUgGCCa -3' miRNA: 3'- gccUGCGcCU--UGCCGGGCUGAaUGGc -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 205016 | 0.67 | 0.876651 |
Target: 5'- -aGACGCGG-ACGGCCUGuuACUcccaggagaUACCa -3' miRNA: 3'- gcCUGCGCCuUGCCGGGC--UGA---------AUGGc -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 88701 | 0.67 | 0.88335 |
Target: 5'- uCGGAgCGCuaGGGCGGCCCgGACgacguggaGCCGg -3' miRNA: 3'- -GCCU-GCGc-CUUGCCGGG-CUGaa------UGGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 88423 | 0.67 | 0.896146 |
Target: 5'- aGGGCGgGGGcgcGCGGCCCaGGagccccaUACCGc -3' miRNA: 3'- gCCUGCgCCU---UGCCGGG-CUga-----AUGGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 12946 | 0.67 | 0.902237 |
Target: 5'- uCGGGCGUGGG--GGUgCUGACUcgACCGg -3' miRNA: 3'- -GCCUGCGCCUugCCG-GGCUGAa-UGGC- -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 181270 | 0.67 | 0.902237 |
Target: 5'- gCGGACGCGGAggGCGGgagaggCGGCU-GCCc -3' miRNA: 3'- -GCCUGCGCCU--UGCCgg----GCUGAaUGGc -5' |
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29232 | 3' | -58 | NC_006150.1 | + | 115160 | 0.66 | 0.908118 |
Target: 5'- gGGAUGgGGAuaAUGGCuCCGgugaGCUUugCGa -3' miRNA: 3'- gCCUGCgCCU--UGCCG-GGC----UGAAugGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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