miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29233 3' -54.4 NC_006150.1 + 121966 0.66 0.972654
Target:  5'- -aCCCGGACCUgggUGGcguGAUGCCgcccUGAUCAu -3'
miRNA:   3'- ucGGGUCUGGG---AUC---UUACGG----ACUAGU- -5'
29233 3' -54.4 NC_006150.1 + 156164 0.66 0.969815
Target:  5'- uGGCCCAcugcauacAUCUUAGc-UGCCUGAUCAu -3'
miRNA:   3'- -UCGGGUc-------UGGGAUCuuACGGACUAGU- -5'
29233 3' -54.4 NC_006150.1 + 88501 0.66 0.966772
Target:  5'- uGCCCcGacgaGCCCUGGAcgcaGUGCUgGAUCGg -3'
miRNA:   3'- uCGGGuC----UGGGAUCU----UACGGaCUAGU- -5'
29233 3' -54.4 NC_006150.1 + 92595 0.66 0.960048
Target:  5'- cGGCCCAGACUC-GGGAcGCC-GAccUCAg -3'
miRNA:   3'- -UCGGGUCUGGGaUCUUaCGGaCU--AGU- -5'
29233 3' -54.4 NC_006150.1 + 147791 0.67 0.956357
Target:  5'- cGUCCGGugCCUGGAcgGUgaGggCAc -3'
miRNA:   3'- uCGGGUCugGGAUCUuaCGgaCuaGU- -5'
29233 3' -54.4 NC_006150.1 + 92661 0.69 0.895801
Target:  5'- gAGCCgGGGCCCUgugacgugugccuucGGggUGCguggcuaCUGGUCGu -3'
miRNA:   3'- -UCGGgUCUGGGA---------------UCuuACG-------GACUAGU- -5'
29233 3' -54.4 NC_006150.1 + 131212 0.69 0.887083
Target:  5'- gGGCCUgAGGCCgaGGAgAUGCCUGGUg- -3'
miRNA:   3'- -UCGGG-UCUGGgaUCU-UACGGACUAgu -5'
29233 3' -54.4 NC_006150.1 + 132915 0.69 0.880118
Target:  5'- uGGCCUgcugauuGACCCUAccucugGCCUGAUCGg -3'
miRNA:   3'- -UCGGGu------CUGGGAUcuua--CGGACUAGU- -5'
29233 3' -54.4 NC_006150.1 + 63318 0.69 0.872932
Target:  5'- cGCCCuGACCCgcuacGAAcGCUUGAUUAa -3'
miRNA:   3'- uCGGGuCUGGGau---CUUaCGGACUAGU- -5'
29233 3' -54.4 NC_006150.1 + 36574 0.7 0.850103
Target:  5'- cGCCgcguaaCAGACCCcAGAcgGCCaGAUCGg -3'
miRNA:   3'- uCGG------GUCUGGGaUCUuaCGGaCUAGU- -5'
29233 3' -54.4 NC_006150.1 + 215470 0.73 0.693495
Target:  5'- uAGCCCAGACagaCUAGAAUGUCcaggGAUa- -3'
miRNA:   3'- -UCGGGUCUGg--GAUCUUACGGa---CUAgu -5'
29233 3' -54.4 NC_006150.1 + 149951 1.09 0.005189
Target:  5'- aAGCCCAGACCCUAGAAUGCCUGAUCAa -3'
miRNA:   3'- -UCGGGUCUGGGAUCUUACGGACUAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.