miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29234 5' -59.3 NC_006150.1 + 27130 0.66 0.863267
Target:  5'- uGCUcGGGUCgucugcgauacucguGGCGGCACUugcgguacCCGCGGGa -3'
miRNA:   3'- -CGGuUCCGG---------------UCGUCGUGGu-------GGCGUCC- -5'
29234 5' -59.3 NC_006150.1 + 85918 0.66 0.860348
Target:  5'- gGCCGAGcGCCcaccgaucuGGCGGCGCUguguACgGCGGc -3'
miRNA:   3'- -CGGUUC-CGG---------UCGUCGUGG----UGgCGUCc -5'
29234 5' -59.3 NC_006150.1 + 181297 0.66 0.860348
Target:  5'- uGCCcuGGGCggCGGCGGUAgCAUgaUGCAGGa -3'
miRNA:   3'- -CGGu-UCCG--GUCGUCGUgGUG--GCGUCC- -5'
29234 5' -59.3 NC_006150.1 + 111731 0.66 0.860348
Target:  5'- cGCCA--GCCAGCAGCagcagaaaACCAUCGUc-- -3'
miRNA:   3'- -CGGUucCGGUCGUCG--------UGGUGGCGucc -5'
29234 5' -59.3 NC_006150.1 + 853 0.66 0.852919
Target:  5'- cGCCGGGcGCCGGCGGUguagacggugugGCCGCgaGCGc- -3'
miRNA:   3'- -CGGUUC-CGGUCGUCG------------UGGUGg-CGUcc -5'
29234 5' -59.3 NC_006150.1 + 91226 0.66 0.852919
Target:  5'- gGCCAacauaaacugguAGGCCuGCAGCGCUuuuugaaugCGCAGu -3'
miRNA:   3'- -CGGU------------UCCGGuCGUCGUGGug-------GCGUCc -5'
29234 5' -59.3 NC_006150.1 + 160553 0.66 0.852919
Target:  5'- gGCCAuggugggcauaGGGCCAaUAGCACCgucACCaUAGGg -3'
miRNA:   3'- -CGGU-----------UCCGGUcGUCGUGG---UGGcGUCC- -5'
29234 5' -59.3 NC_006150.1 + 202856 0.66 0.845305
Target:  5'- aGCgCGGGaGCUGGCAGCGCgggCACCuggaacGCGGGc -3'
miRNA:   3'- -CG-GUUC-CGGUCGUCGUG---GUGG------CGUCC- -5'
29234 5' -59.3 NC_006150.1 + 217359 0.66 0.845305
Target:  5'- cGCCAAGaGCgCAccGCccuGCGCUGgCGCAGGc -3'
miRNA:   3'- -CGGUUC-CG-GU--CGu--CGUGGUgGCGUCC- -5'
29234 5' -59.3 NC_006150.1 + 80208 0.66 0.845305
Target:  5'- cCCGAGGCCguuuccuggaAGCucGCGCuCGCCG-AGGa -3'
miRNA:   3'- cGGUUCCGG----------UCGu-CGUG-GUGGCgUCC- -5'
29234 5' -59.3 NC_006150.1 + 65194 0.66 0.844534
Target:  5'- cGCCGA-GCUAGCccgacccgaacugAGCGCCaaACUGCAGa -3'
miRNA:   3'- -CGGUUcCGGUCG-------------UCGUGG--UGGCGUCc -5'
29234 5' -59.3 NC_006150.1 + 215943 0.66 0.837514
Target:  5'- uCCAGagcGGCCugaAGCAGCAUCGCCuGUAcGGc -3'
miRNA:   3'- cGGUU---CCGG---UCGUCGUGGUGG-CGU-CC- -5'
29234 5' -59.3 NC_006150.1 + 88488 0.66 0.837514
Target:  5'- cGCCAGGGCU----GCGCgGCCGCucccuGGa -3'
miRNA:   3'- -CGGUUCCGGucguCGUGgUGGCGu----CC- -5'
29234 5' -59.3 NC_006150.1 + 2425 0.66 0.837514
Target:  5'- uGCuCGuucGGCCuGGCGGCugguGCCGuuGCGGGu -3'
miRNA:   3'- -CG-GUu--CCGG-UCGUCG----UGGUggCGUCC- -5'
29234 5' -59.3 NC_006150.1 + 37850 0.66 0.837514
Target:  5'- gGCCAAGcgagaGgCAGcCAGCGCC-CCGCAu- -3'
miRNA:   3'- -CGGUUC-----CgGUC-GUCGUGGuGGCGUcc -5'
29234 5' -59.3 NC_006150.1 + 218342 0.66 0.829551
Target:  5'- -aCGAGGaCCAG-AGCGCgACC-CAGGa -3'
miRNA:   3'- cgGUUCC-GGUCgUCGUGgUGGcGUCC- -5'
29234 5' -59.3 NC_006150.1 + 35938 0.66 0.829551
Target:  5'- aGCCGAGGUCccuGGCcacacucuGCugCACaCGCAGc -3'
miRNA:   3'- -CGGUUCCGG---UCGu-------CGugGUG-GCGUCc -5'
29234 5' -59.3 NC_006150.1 + 192438 0.66 0.821422
Target:  5'- gGCCAAGGCUuuAG-AGacuUCGCCGCAGa -3'
miRNA:   3'- -CGGUUCCGG--UCgUCgu-GGUGGCGUCc -5'
29234 5' -59.3 NC_006150.1 + 147880 0.66 0.821422
Target:  5'- uCCAGGGCCgcucggcaAGCAGUuauaCGCgCGUAGGc -3'
miRNA:   3'- cGGUUCCGG--------UCGUCGug--GUG-GCGUCC- -5'
29234 5' -59.3 NC_006150.1 + 101028 0.67 0.813136
Target:  5'- gGCguGGcauGCCAGCAGC-CaCACUGcCAGGa -3'
miRNA:   3'- -CGguUC---CGGUCGUCGuG-GUGGC-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.