miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29235 5' -51.4 NC_006150.1 + 215394 0.66 0.998218
Target:  5'- gUCGaACgGCGAGuaCGGAGggACACCGg -3'
miRNA:   3'- -AGCaUGgUGCUUugGCCUCa-UGUGGU- -5'
29235 5' -51.4 NC_006150.1 + 436 0.66 0.997491
Target:  5'- cCGUuCCGgGAGGCUGGAGggggGC-CCGg -3'
miRNA:   3'- aGCAuGGUgCUUUGGCCUCa---UGuGGU- -5'
29235 5' -51.4 NC_006150.1 + 195789 0.66 0.997043
Target:  5'- gUCGUuucCCugGAAGgCGGAGgAC-CCAu -3'
miRNA:   3'- -AGCAu--GGugCUUUgGCCUCaUGuGGU- -5'
29235 5' -51.4 NC_006150.1 + 558 0.66 0.997043
Target:  5'- cCGcGCCGCGAAACCcGAGc-CGCCc -3'
miRNA:   3'- aGCaUGGUGCUUUGGcCUCauGUGGu -5'
29235 5' -51.4 NC_006150.1 + 31205 0.66 0.997043
Target:  5'- aCG-ACCAUGAAGCUGcaucuucuGAGUccguGCACCAg -3'
miRNA:   3'- aGCaUGGUGCUUUGGC--------CUCA----UGUGGU- -5'
29235 5' -51.4 NC_006150.1 + 69359 0.66 0.996476
Target:  5'- cCGUGCCACGugagccgcagcAACCgugggauguugacGGAGcGCACCAc -3'
miRNA:   3'- aGCAUGGUGCu----------UUGG-------------CCUCaUGUGGU- -5'
29235 5' -51.4 NC_006150.1 + 136219 0.67 0.994544
Target:  5'- gCGUGCCA----GCaCGGAGcUACGCCGg -3'
miRNA:   3'- aGCAUGGUgcuuUG-GCCUC-AUGUGGU- -5'
29235 5' -51.4 NC_006150.1 + 47115 0.67 0.992769
Target:  5'- aCGUGCCGCGAcauuccggAACCuGGAcGUAUGCgAa -3'
miRNA:   3'- aGCAUGGUGCU--------UUGG-CCU-CAUGUGgU- -5'
29235 5' -51.4 NC_006150.1 + 82612 0.67 0.992769
Target:  5'- ---cGCCAUGGAACUGGAGUgucuaaaguACugCGa -3'
miRNA:   3'- agcaUGGUGCUUUGGCCUCA---------UGugGU- -5'
29235 5' -51.4 NC_006150.1 + 299 0.68 0.991723
Target:  5'- gUCGUgccgagGCCGCGGAGgacggcugcCCGGGGUugGCg- -3'
miRNA:   3'- -AGCA------UGGUGCUUU---------GGCCUCAugUGgu -5'
29235 5' -51.4 NC_006150.1 + 170959 0.68 0.990561
Target:  5'- aUCGUGCCGCaGAGACUGuGGUGgACa- -3'
miRNA:   3'- -AGCAUGGUG-CUUUGGCcUCAUgUGgu -5'
29235 5' -51.4 NC_006150.1 + 221441 0.68 0.990561
Target:  5'- gCGcGCCACc---CCGGAGUGCcuGCCAg -3'
miRNA:   3'- aGCaUGGUGcuuuGGCCUCAUG--UGGU- -5'
29235 5' -51.4 NC_006150.1 + 161200 0.68 0.986294
Target:  5'- uUC-UGCCugGGGACguCGGAGgaGCACCAu -3'
miRNA:   3'- -AGcAUGGugCUUUG--GCCUCa-UGUGGU- -5'
29235 5' -51.4 NC_006150.1 + 112318 0.69 0.980471
Target:  5'- gUUGUACCACGGcgucggcGACCGuGGUGCGgCGc -3'
miRNA:   3'- -AGCAUGGUGCU-------UUGGCcUCAUGUgGU- -5'
29235 5' -51.4 NC_006150.1 + 54174 0.7 0.973515
Target:  5'- gCGUACCuACGAAAauCCGGc--GCACCAg -3'
miRNA:   3'- aGCAUGG-UGCUUU--GGCCucaUGUGGU- -5'
29235 5' -51.4 NC_006150.1 + 127593 0.7 0.973515
Target:  5'- -gGUGCCAagaaUGAAACCGGAGacugGCuGCCGc -3'
miRNA:   3'- agCAUGGU----GCUUUGGCCUCa---UG-UGGU- -5'
29235 5' -51.4 NC_006150.1 + 122329 0.7 0.964589
Target:  5'- -aGUGCCACGAAACgUGGuGUG-GCCAg -3'
miRNA:   3'- agCAUGGUGCUUUG-GCCuCAUgUGGU- -5'
29235 5' -51.4 NC_006150.1 + 102722 0.71 0.936088
Target:  5'- aUCGcgGCCuCGAGAUCGGAGaGCACgCAa -3'
miRNA:   3'- -AGCa-UGGuGCUUUGGCCUCaUGUG-GU- -5'
29235 5' -51.4 NC_006150.1 + 82518 0.71 0.936088
Target:  5'- cUGUACCGCaGGAucuacCCGGAgcugGUGCGCCAg -3'
miRNA:   3'- aGCAUGGUG-CUUu----GGCCU----CAUGUGGU- -5'
29235 5' -51.4 NC_006150.1 + 142381 0.72 0.914646
Target:  5'- aCGUGCCACcgGAGGCCGGuu--CGCCGc -3'
miRNA:   3'- aGCAUGGUG--CUUUGGCCucauGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.