miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29236 3' -60.3 NC_006150.1 + 210803 0.66 0.833412
Target:  5'- uUUGCuGCCgGCCGUGUgcuaAUCGUUCGc -3'
miRNA:   3'- gAGCGcCGG-CGGCACGag--UAGCGAGU- -5'
29236 3' -60.3 NC_006150.1 + 18409 0.66 0.817311
Target:  5'- gUCGCGGUgGuuGUGCUgguUAUCGacaUCGu -3'
miRNA:   3'- gAGCGCCGgCggCACGA---GUAGCg--AGU- -5'
29236 3' -60.3 NC_006150.1 + 108157 0.66 0.80903
Target:  5'- -cCGCGG-CGCCgGUGaCUCAUCGUg-- -3'
miRNA:   3'- gaGCGCCgGCGG-CAC-GAGUAGCGagu -5'
29236 3' -60.3 NC_006150.1 + 118921 0.66 0.80903
Target:  5'- uCUCGCaggugcgugaGGCaCGCCGcGCUCA--GCUCGa -3'
miRNA:   3'- -GAGCG----------CCG-GCGGCaCGAGUagCGAGU- -5'
29236 3' -60.3 NC_006150.1 + 95088 0.66 0.792041
Target:  5'- uUCGCGcaccucGCCGCCGUGUUCGg-GCg-- -3'
miRNA:   3'- gAGCGC------CGGCGGCACGAGUagCGagu -5'
29236 3' -60.3 NC_006150.1 + 92775 0.66 0.780715
Target:  5'- uCUCGCaGCucagcgaccgagaaCGCCGUGCUCAgcgggcacggCGCUUc -3'
miRNA:   3'- -GAGCGcCG--------------GCGGCACGAGUa---------GCGAGu -5'
29236 3' -60.3 NC_006150.1 + 73936 0.67 0.738197
Target:  5'- gUCGCGGCCGCCGcuUGCgagUCAaCGaccgCAg -3'
miRNA:   3'- gAGCGCCGGCGGC--ACG---AGUaGCga--GU- -5'
29236 3' -60.3 NC_006150.1 + 216630 0.68 0.715724
Target:  5'- gUgGCGGCUGCgGUGCUCGgcagggaccaggGCUCGu -3'
miRNA:   3'- gAgCGCCGGCGgCACGAGUag----------CGAGU- -5'
29236 3' -60.3 NC_006150.1 + 174861 0.69 0.652332
Target:  5'- gUCGaGGCCGCCGUGaaagCcgCGCUUc -3'
miRNA:   3'- gAGCgCCGGCGGCACga--GuaGCGAGu -5'
29236 3' -60.3 NC_006150.1 + 3262 0.69 0.62318
Target:  5'- uUCGCGGcCCGuuG-GCUCGUCGaauaUCu -3'
miRNA:   3'- gAGCGCC-GGCggCaCGAGUAGCg---AGu -5'
29236 3' -60.3 NC_006150.1 + 58469 0.7 0.594082
Target:  5'- gUUGCuGCUGCUGUGCUUGUUGCUg- -3'
miRNA:   3'- gAGCGcCGGCGGCACGAGUAGCGAgu -5'
29236 3' -60.3 NC_006150.1 + 111384 0.7 0.582497
Target:  5'- uUCGCGGUCGUCaucgucuucuucUGaCUCGUCGCUCGu -3'
miRNA:   3'- gAGCGCCGGCGGc-----------AC-GAGUAGCGAGU- -5'
29236 3' -60.3 NC_006150.1 + 123736 0.72 0.446085
Target:  5'- --gGCcGCCGCCGUGCgUAUCGCUUg -3'
miRNA:   3'- gagCGcCGGCGGCACGaGUAGCGAGu -5'
29236 3' -60.3 NC_006150.1 + 173815 0.72 0.446085
Target:  5'- gCUCGCGGCCGCgUGUGC-C-UCGCa-- -3'
miRNA:   3'- -GAGCGCCGGCG-GCACGaGuAGCGagu -5'
29236 3' -60.3 NC_006150.1 + 154822 1.08 0.002012
Target:  5'- cCUCGCGGCCGCCGUGCUCAUCGCUCAg -3'
miRNA:   3'- -GAGCGCCGGCGGCACGAGUAGCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.