Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29237 | 3' | -58.2 | NC_006150.1 | + | 37929 | 0.66 | 0.84116 |
|
Target: 5'- -cCCAAGcGGCAcAGuCgCCCGAGGUUUg -3' miRNA: 3'- aaGGUUC-CCGU-UCuGgGGGUUCCGAG- -5' |
|||||||
| 29237 | 3' | -58.2 | NC_006150.1 | + | 114244 | 0.68 | 0.73406 |
|
Target: 5'- cUUUCGAGGGCGG---CCCCGAGGCcCa -3' miRNA: 3'- -AAGGUUCCCGUUcugGGGGUUCCGaG- -5' |
|||||||
| 29237 | 3' | -58.2 | NC_006150.1 | + | 82061 | 0.69 | 0.69488 |
|
Target: 5'- -aCCAGGGGCGcucgcugaacaAGcGCCUgCAGGGCUUg -3' miRNA: 3'- aaGGUUCCCGU-----------UC-UGGGgGUUCCGAG- -5' |
|||||||
| 29237 | 3' | -58.2 | NC_006150.1 | + | 88164 | 0.7 | 0.64482 |
|
Target: 5'- -aCCGAGGcuGCGAGGCCCCgguGGGCg- -3' miRNA: 3'- aaGGUUCC--CGUUCUGGGGgu-UCCGag -5' |
|||||||
| 29237 | 3' | -58.2 | NC_006150.1 | + | 23308 | 0.7 | 0.624671 |
|
Target: 5'- gUCCAGGGGCc--GCCUCCAAGgGCg- -3' miRNA: 3'- aAGGUUCCCGuucUGGGGGUUC-CGag -5' |
|||||||
| 29237 | 3' | -58.2 | NC_006150.1 | + | 51677 | 0.71 | 0.584498 |
|
Target: 5'- cUUCUGuguuGGGCAAGACggcgCUCAGGGCUCa -3' miRNA: 3'- -AAGGUu---CCCGUUCUGg---GGGUUCCGAG- -5' |
|||||||
| 29237 | 3' | -58.2 | NC_006150.1 | + | 81673 | 0.71 | 0.564583 |
|
Target: 5'- uUUuuGAGGGCcgugAGGACCCCagaAAGGCUg -3' miRNA: 3'- -AAggUUCCCG----UUCUGGGGg--UUCCGAg -5' |
|||||||
| 29237 | 3' | -58.2 | NC_006150.1 | + | 81394 | 0.74 | 0.393208 |
|
Target: 5'- aUUCAuGGGCAGGACCCCCAGaguacguccaguaacGGCg- -3' miRNA: 3'- aAGGUuCCCGUUCUGGGGGUU---------------CCGag -5' |
|||||||
| 29237 | 3' | -58.2 | NC_006150.1 | + | 157098 | 1.06 | 0.003375 |
|
Target: 5'- cUUCCAAGGGCAAGACCCCCAAGGCUCc -3' miRNA: 3'- -AAGGUUCCCGUUCUGGGGGUUCCGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home