miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29239 3' -44.1 NC_006150.1 + 169126 0.66 1
Target:  5'- -gGUGUGUGuuGCGUGugcAUGuGCGCCGa-- -3'
miRNA:   3'- gaUAUAUAC--UGCAU---UAC-CGCGGUaau -5'
29239 3' -44.1 NC_006150.1 + 220750 0.66 1
Target:  5'- -------cGACGU--UGGCGCCAc-- -3'
miRNA:   3'- gauauauaCUGCAuuACCGCGGUaau -5'
29239 3' -44.1 NC_006150.1 + 58182 0.66 1
Target:  5'- gCUGUugggGAUuuuAUGGCGCCAUUGu -3'
miRNA:   3'- -GAUAuauaCUGcauUACCGCGGUAAU- -5'
29239 3' -44.1 NC_006150.1 + 220489 0.67 1
Target:  5'- uCUGUGgGUGAaaguugcCGUAgaucaGUGGCGCCAa-- -3'
miRNA:   3'- -GAUAUaUACU-------GCAU-----UACCGCGGUaau -5'
29239 3' -44.1 NC_006150.1 + 154543 0.66 1
Target:  5'- gCUGU---UGugGUAcUGGUGCCAc-- -3'
miRNA:   3'- -GAUAuauACugCAUuACCGCGGUaau -5'
29239 3' -44.1 NC_006150.1 + 26481 0.66 1
Target:  5'- -----cAUGGCgGUAGUGGCGCUu--- -3'
miRNA:   3'- gauauaUACUG-CAUUACCGCGGuaau -5'
29239 3' -44.1 NC_006150.1 + 23297 0.67 1
Target:  5'- -cGUGUGUGACGgcAUGGUGaugaugagCGUUAu -3'
miRNA:   3'- gaUAUAUACUGCauUACCGCg-------GUAAU- -5'
29239 3' -44.1 NC_006150.1 + 38576 0.68 0.999998
Target:  5'- gUGUAUGUGGCGcUGGUGG-GUCAg-- -3'
miRNA:   3'- gAUAUAUACUGC-AUUACCgCGGUaau -5'
29239 3' -44.1 NC_006150.1 + 147067 0.69 0.999992
Target:  5'- aCUGUGacUGACGUc-UGGUGCCAc-- -3'
miRNA:   3'- -GAUAUauACUGCAuuACCGCGGUaau -5'
29239 3' -44.1 NC_006150.1 + 120084 0.69 0.999988
Target:  5'- -----cGUGAgGcccGUGGCGCCAUUAg -3'
miRNA:   3'- gauauaUACUgCau-UACCGCGGUAAU- -5'
29239 3' -44.1 NC_006150.1 + 112809 0.69 0.999988
Target:  5'- gCUAUuUA-GAUGUuAUGGCGCCAg-- -3'
miRNA:   3'- -GAUAuAUaCUGCAuUACCGCGGUaau -5'
29239 3' -44.1 NC_006150.1 + 108787 0.73 0.998013
Target:  5'- uCUGUAUAcgcucaccgcgcUGAgGUGauGUGGCGCCAUa- -3'
miRNA:   3'- -GAUAUAU------------ACUgCAU--UACCGCGGUAau -5'
29239 3' -44.1 NC_006150.1 + 160808 0.97 0.246882
Target:  5'- ---cAUAUGACGUAAUGGCGCCAUUAc -3'
miRNA:   3'- gauaUAUACUGCAUUACCGCGGUAAU- -5'
29239 3' -44.1 NC_006150.1 + 161064 1.08 0.061353
Target:  5'- gCUAUAUAUGACGUAAUGGCGCCAUUAc -3'
miRNA:   3'- -GAUAUAUACUGCAUUACCGCGGUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.