miRNA display CGI


Results 1 - 20 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29239 5' -46.4 NC_006150.1 + 91394 0.66 0.999996
Target:  5'- -aCGAUGAGCCccaggauacaccGAUGCCuucgaugAUGGCa -3'
miRNA:   3'- ccGUUAUUCGG------------UUGCGGuaua---UACCG- -5'
29239 5' -46.4 NC_006150.1 + 131073 0.66 0.999996
Target:  5'- --uGAUGccAGUCGACGCauaggGUGUGGCu -3'
miRNA:   3'- ccgUUAU--UCGGUUGCGgua--UAUACCG- -5'
29239 5' -46.4 NC_006150.1 + 181975 0.66 0.999996
Target:  5'- aGGCAGcAAGUguAUGC-AUGUAcUGGCa -3'
miRNA:   3'- -CCGUUaUUCGguUGCGgUAUAU-ACCG- -5'
29239 5' -46.4 NC_006150.1 + 113110 0.66 0.999996
Target:  5'- aGGCGGaAAGCCGGcCGCgAUuga-GGCu -3'
miRNA:   3'- -CCGUUaUUCGGUU-GCGgUAuauaCCG- -5'
29239 5' -46.4 NC_006150.1 + 199325 0.66 0.999996
Target:  5'- aGCGAUGaaaguAGCC-ACGCuCAUgAUGUaGGCg -3'
miRNA:   3'- cCGUUAU-----UCGGuUGCG-GUA-UAUA-CCG- -5'
29239 5' -46.4 NC_006150.1 + 506 0.66 0.999996
Target:  5'- gGGCAGgacGCCGGCaGCC-----UGGCg -3'
miRNA:   3'- -CCGUUauuCGGUUG-CGGuauauACCG- -5'
29239 5' -46.4 NC_006150.1 + 215748 0.66 0.999996
Target:  5'- cGCAAUcgcuGCUAACGCCugucAUAUcgagguUGGCg -3'
miRNA:   3'- cCGUUAuu--CGGUUGCGG----UAUAu-----ACCG- -5'
29239 5' -46.4 NC_006150.1 + 58847 0.66 0.999996
Target:  5'- aGGCGucuuUGAGgaacaCCGGCGCCGgcg--GGCu -3'
miRNA:   3'- -CCGUu---AUUC-----GGUUGCGGUauauaCCG- -5'
29239 5' -46.4 NC_006150.1 + 217619 0.66 0.999995
Target:  5'- uGCAuuu-GCCuGCGCCAgcgcagGGCg -3'
miRNA:   3'- cCGUuauuCGGuUGCGGUauaua-CCG- -5'
29239 5' -46.4 NC_006150.1 + 161403 0.66 0.999995
Target:  5'- gGGCGguccauaugacguauAUAGGaaGGC-CCAUAUAUGGUa -3'
miRNA:   3'- -CCGU---------------UAUUCggUUGcGGUAUAUACCG- -5'
29239 5' -46.4 NC_006150.1 + 54938 0.66 0.999995
Target:  5'- aGCcgc-AGCCGuCGUCAUGcAUGGCg -3'
miRNA:   3'- cCGuuauUCGGUuGCGGUAUaUACCG- -5'
29239 5' -46.4 NC_006150.1 + 25012 0.66 0.999992
Target:  5'- uGGCGaaGUAucGGCUccccuGAUGCCAccGUAUGGUg -3'
miRNA:   3'- -CCGU--UAU--UCGG-----UUGCGGUa-UAUACCG- -5'
29239 5' -46.4 NC_006150.1 + 116796 0.66 0.999992
Target:  5'- cGGCAggcuucaaAUAGGUUGACGUCcucguugGUGGCg -3'
miRNA:   3'- -CCGU--------UAUUCGGUUGCGGuaua---UACCG- -5'
29239 5' -46.4 NC_006150.1 + 50260 0.66 0.999992
Target:  5'- cGGCGAcAAGCgCAGauCGCCGaaacacuaacUGUaaGUGGCa -3'
miRNA:   3'- -CCGUUaUUCG-GUU--GCGGU----------AUA--UACCG- -5'
29239 5' -46.4 NC_006150.1 + 87436 0.66 0.999992
Target:  5'- cGUAGgu-GCCuACGUCAUcauaaaaggguGUGUGGCa -3'
miRNA:   3'- cCGUUauuCGGuUGCGGUA-----------UAUACCG- -5'
29239 5' -46.4 NC_006150.1 + 194723 0.66 0.999989
Target:  5'- uGGCcGUcguuGCCAcCGUucuCGUGUAUGGCc -3'
miRNA:   3'- -CCGuUAuu--CGGUuGCG---GUAUAUACCG- -5'
29239 5' -46.4 NC_006150.1 + 167586 0.66 0.999989
Target:  5'- aGGgAAUGAGCCGcagggucACuGCgGUA-AUGGCg -3'
miRNA:   3'- -CCgUUAUUCGGU-------UG-CGgUAUaUACCG- -5'
29239 5' -46.4 NC_006150.1 + 122320 0.66 0.999989
Target:  5'- cGGCAcgGUAGuGCCAcgaaACGUg--GUGUGGCc -3'
miRNA:   3'- -CCGU--UAUU-CGGU----UGCGguaUAUACCG- -5'
29239 5' -46.4 NC_006150.1 + 124978 0.66 0.999989
Target:  5'- cGGCucgcuauGCCGAUGUCAUucaggagGUGGUg -3'
miRNA:   3'- -CCGuuauu--CGGUUGCGGUAua-----UACCG- -5'
29239 5' -46.4 NC_006150.1 + 110522 0.66 0.999989
Target:  5'- uGCGGUGuGGUgcACGCCGU--GUGGCa -3'
miRNA:   3'- cCGUUAU-UCGguUGCGGUAuaUACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.