miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2924 3' -50 NC_001493.1 + 33184 0.66 0.997573
Target:  5'- cGGAUGUUGACcagGUCGACGaacugcuguuguuGUACgCGGa -3'
miRNA:   3'- cCUUGCGACUGa--CAGUUGU-------------CAUG-GCC- -5'
2924 3' -50 NC_001493.1 + 57560 0.66 0.997169
Target:  5'- aGGGCGCUGACgac--ACAGggcCCGGa -3'
miRNA:   3'- cCUUGCGACUGacaguUGUCau-GGCC- -5'
2924 3' -50 NC_001493.1 + 22688 0.66 0.996655
Target:  5'- cGAAUaaUGugUGUCAAUgaGGUGCCGu -3'
miRNA:   3'- cCUUGcgACugACAGUUG--UCAUGGCc -5'
2924 3' -50 NC_001493.1 + 87039 0.66 0.996655
Target:  5'- aGGAugaacuCGC-GGCUcugGUCGAaAGUACCGGu -3'
miRNA:   3'- -CCUu-----GCGaCUGA---CAGUUgUCAUGGCC- -5'
2924 3' -50 NC_001493.1 + 59516 0.66 0.996487
Target:  5'- ---gUGgUGuCUGUCAACAGUugaucagcgggucaACCGGg -3'
miRNA:   3'- ccuuGCgACuGACAGUUGUCA--------------UGGCC- -5'
2924 3' -50 NC_001493.1 + 106909 0.67 0.994637
Target:  5'- aGGACGCaugUGACcccuugGUCaAGCGGUACCuGGc -3'
miRNA:   3'- cCUUGCG---ACUGa-----CAG-UUGUCAUGG-CC- -5'
2924 3' -50 NC_001493.1 + 62927 0.67 0.994134
Target:  5'- cGGuauCGUUGGCUcccgugggcuucgccGUCGugguggucACGGUGCCGGu -3'
miRNA:   3'- -CCuu-GCGACUGA---------------CAGU--------UGUCAUGGCC- -5'
2924 3' -50 NC_001493.1 + 32141 0.67 0.993779
Target:  5'- ---uUGCUGG-UGUCGACGGUcgugaacuugacACCGGg -3'
miRNA:   3'- ccuuGCGACUgACAGUUGUCA------------UGGCC- -5'
2924 3' -50 NC_001493.1 + 29521 0.67 0.993779
Target:  5'- cGGACcCUGGCUGUCGACAcacCCGu -3'
miRNA:   3'- cCUUGcGACUGACAGUUGUcauGGCc -5'
2924 3' -50 NC_001493.1 + 62838 0.67 0.992813
Target:  5'- ---uCGC-GACgGUC-ACGGUGCCGGu -3'
miRNA:   3'- ccuuGCGaCUGaCAGuUGUCAUGGCC- -5'
2924 3' -50 NC_001493.1 + 52182 0.67 0.992813
Target:  5'- cGGggUGgUGugUGUCAGCAuucacaugGCgGGg -3'
miRNA:   3'- -CCuuGCgACugACAGUUGUca------UGgCC- -5'
2924 3' -50 NC_001493.1 + 9571 0.67 0.991732
Target:  5'- gGGGGCGCgGA--GUCGugGGUGgCGGc -3'
miRNA:   3'- -CCUUGCGaCUgaCAGUugUCAUgGCC- -5'
2924 3' -50 NC_001493.1 + 125126 0.67 0.991732
Target:  5'- gGGGGCGCgGA--GUCGugGGUGgCGGc -3'
miRNA:   3'- -CCUUGCGaCUgaCAGUugUCAUgGCC- -5'
2924 3' -50 NC_001493.1 + 29388 0.67 0.991732
Target:  5'- cGGGCGCUcgGACUGUC-GCGG-ACCa- -3'
miRNA:   3'- cCUUGCGA--CUGACAGuUGUCaUGGcc -5'
2924 3' -50 NC_001493.1 + 79045 0.68 0.9877
Target:  5'- cGAAUGCUGACggcgGUCggUucaUGCUGGa -3'
miRNA:   3'- cCUUGCGACUGa---CAGuuGuc-AUGGCC- -5'
2924 3' -50 NC_001493.1 + 36189 0.68 0.986064
Target:  5'- gGGAACG--GGCUGUggCAGCGaggguuGUACCGGg -3'
miRNA:   3'- -CCUUGCgaCUGACA--GUUGU------CAUGGCC- -5'
2924 3' -50 NC_001493.1 + 28000 0.68 0.984266
Target:  5'- aGGAAUcgGgUGACgaugagagUGUCGAucCGGUGCCGGa -3'
miRNA:   3'- -CCUUG--CgACUG--------ACAGUU--GUCAUGGCC- -5'
2924 3' -50 NC_001493.1 + 41369 0.69 0.97707
Target:  5'- aGAAUGC-GACcagGUCGACcgagacauggaaugAGUACCGGa -3'
miRNA:   3'- cCUUGCGaCUGa--CAGUUG--------------UCAUGGCC- -5'
2924 3' -50 NC_001493.1 + 8886 0.69 0.969582
Target:  5'- uGGAGCGCgUGGCgggguccgggGUCAACguGGUcgaagaGCCGGu -3'
miRNA:   3'- -CCUUGCG-ACUGa---------CAGUUG--UCA------UGGCC- -5'
2924 3' -50 NC_001493.1 + 124440 0.69 0.969582
Target:  5'- uGGAGCGCgUGGCgggguccgggGUCAACguGGUcgaagaGCCGGu -3'
miRNA:   3'- -CCUUGCG-ACUGa---------CAGUUG--UCA------UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.