miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2924 5' -55.9 NC_001493.1 + 33697 0.66 0.860883
Target:  5'- -aUUGGUAUguGguGCACGACGGCUGCu -3'
miRNA:   3'- uaGGCCGUGguU--CGUGUUGUCGACGu -5'
2924 5' -55.9 NC_001493.1 + 58076 0.66 0.852059
Target:  5'- -aUCGGCAUCGGGCAUGugAGCgucggggUGCu -3'
miRNA:   3'- uaGGCCGUGGUUCGUGUugUCG-------ACGu -5'
2924 5' -55.9 NC_001493.1 + 60048 0.66 0.844648
Target:  5'- --aCGGUGaCGAGCACGGCGGC-GCAu -3'
miRNA:   3'- uagGCCGUgGUUCGUGUUGUCGaCGU- -5'
2924 5' -55.9 NC_001493.1 + 57593 0.66 0.836217
Target:  5'- -aCCGGCAC--GGCgACGACGGgUGCc -3'
miRNA:   3'- uaGGCCGUGguUCG-UGUUGUCgACGu -5'
2924 5' -55.9 NC_001493.1 + 38864 0.66 0.818766
Target:  5'- -aCCGGgcuCACCAAGCuCAuACAGgUGCGg -3'
miRNA:   3'- uaGGCC---GUGGUUCGuGU-UGUCgACGU- -5'
2924 5' -55.9 NC_001493.1 + 43988 0.66 0.818766
Target:  5'- cGUCCuGGcCACCGgugAGCuCAGCGGCUGa- -3'
miRNA:   3'- -UAGG-CC-GUGGU---UCGuGUUGUCGACgu -5'
2924 5' -55.9 NC_001493.1 + 48181 0.67 0.78176
Target:  5'- gGUUgGGgGCCGGGUuCGACAGgCUGCGc -3'
miRNA:   3'- -UAGgCCgUGGUUCGuGUUGUC-GACGU- -5'
2924 5' -55.9 NC_001493.1 + 71049 0.67 0.772125
Target:  5'- uGUUgGGUACCAAGgGCGuguACAGCgaggGCGa -3'
miRNA:   3'- -UAGgCCGUGGUUCgUGU---UGUCGa---CGU- -5'
2924 5' -55.9 NC_001493.1 + 62992 0.68 0.752463
Target:  5'- -aCCGGCACCGugaccGuCGCGACGGCgaaGCc -3'
miRNA:   3'- uaGGCCGUGGUu----C-GUGUUGUCGa--CGu -5'
2924 5' -55.9 NC_001493.1 + 63112 0.68 0.742456
Target:  5'- -aCCGGCACCGugaccacCACGACGGCgaaGCc -3'
miRNA:   3'- uaGGCCGUGGUuc-----GUGUUGUCGa--CGu -5'
2924 5' -55.9 NC_001493.1 + 62950 0.68 0.742456
Target:  5'- -aCCGGCACCGugaccacCACGACGGCgaaGCc -3'
miRNA:   3'- uaGGCCGUGGUuc-----GUGUUGUCGa--CGu -5'
2924 5' -55.9 NC_001493.1 + 62866 0.68 0.742456
Target:  5'- -aCCGGCACCGugaccacCACGACGGCgaaGCc -3'
miRNA:   3'- uaGGCCGUGGUuc-----GUGUUGUCGa--CGu -5'
2924 5' -55.9 NC_001493.1 + 100167 0.68 0.722144
Target:  5'- gAUCUgaaGGCACac-GCGCGACAGgUGCAu -3'
miRNA:   3'- -UAGG---CCGUGguuCGUGUUGUCgACGU- -5'
2924 5' -55.9 NC_001493.1 + 4719 0.68 0.722144
Target:  5'- uUUgGGCACacccggGGGCGCGGCAGCgGCGg -3'
miRNA:   3'- uAGgCCGUGg-----UUCGUGUUGUCGaCGU- -5'
2924 5' -55.9 NC_001493.1 + 58478 0.68 0.711859
Target:  5'- cUCCGGCACuCGAcGUGCAguucaaacucuGCGGCUGUu -3'
miRNA:   3'- uAGGCCGUG-GUU-CGUGU-----------UGUCGACGu -5'
2924 5' -55.9 NC_001493.1 + 2784 0.69 0.701501
Target:  5'- cUCCGGCGCCAAGaggaAGguGCUGg- -3'
miRNA:   3'- uAGGCCGUGGUUCgug-UUguCGACgu -5'
2924 5' -55.9 NC_001493.1 + 118338 0.69 0.701501
Target:  5'- cUCCGGCGCCAAGaggaAGguGCUGg- -3'
miRNA:   3'- uAGGCCGUGGUUCgug-UUguCGACgu -5'
2924 5' -55.9 NC_001493.1 + 103914 0.7 0.638383
Target:  5'- cUCCGGCuucGCCGcGCACAugAGUUGgAu -3'
miRNA:   3'- uAGGCCG---UGGUuCGUGUugUCGACgU- -5'
2924 5' -55.9 NC_001493.1 + 18622 0.72 0.523381
Target:  5'- -aCgGGCcCCGAGUACGACGGCcGCGu -3'
miRNA:   3'- uaGgCCGuGGUUCGUGUUGUCGaCGU- -5'
2924 5' -55.9 NC_001493.1 + 52315 1.07 0.00262
Target:  5'- aAUCCGGCACCAAGCACAACAGCUGCAg -3'
miRNA:   3'- -UAGGCCGUGGUUCGUGUUGUCGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.