miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29240 3' -46.6 NC_006150.1 + 217267 0.66 0.999996
Target:  5'- gCGUUGACauuccgcuuGUCGA-GGCGuu-GGUGGCg -3'
miRNA:   3'- -GUAACUG---------CAGUUaCCGCcauUUACCG- -5'
29240 3' -46.6 NC_006150.1 + 92354 0.66 0.999996
Target:  5'- ---cGGCGUCccgagucugggccgGGCGGUGGGgauucgGGCg -3'
miRNA:   3'- guaaCUGCAGuua-----------CCGCCAUUUa-----CCG- -5'
29240 3' -46.6 NC_006150.1 + 92915 0.66 0.999996
Target:  5'- -cUUGACGgaaacgCAGUGGgGGcUAuggGGCu -3'
miRNA:   3'- guAACUGCa-----GUUACCgCC-AUuuaCCG- -5'
29240 3' -46.6 NC_006150.1 + 56458 0.66 0.999996
Target:  5'- ---cGACGaugCGAUcccgGGCGGcccagaUAGAUGGCg -3'
miRNA:   3'- guaaCUGCa--GUUA----CCGCC------AUUUACCG- -5'
29240 3' -46.6 NC_006150.1 + 29037 0.66 0.999995
Target:  5'- ---aGGCuUUggUGGUGGUuu-UGGCa -3'
miRNA:   3'- guaaCUGcAGuuACCGCCAuuuACCG- -5'
29240 3' -46.6 NC_006150.1 + 28961 0.66 0.99999
Target:  5'- ---gGugGUUu-UGGUGGUAcaGAUGGUu -3'
miRNA:   3'- guaaCugCAGuuACCGCCAU--UUACCG- -5'
29240 3' -46.6 NC_006150.1 + 22602 0.66 0.99999
Target:  5'- aCAUaGugGUUgcauUGGUGGcGAGUGGUg -3'
miRNA:   3'- -GUAaCugCAGuu--ACCGCCaUUUACCG- -5'
29240 3' -46.6 NC_006150.1 + 201759 0.66 0.99999
Target:  5'- ---aGGC-UCGGUGGUGGaGAagGGCg -3'
miRNA:   3'- guaaCUGcAGUUACCGCCaUUuaCCG- -5'
29240 3' -46.6 NC_006150.1 + 148408 0.66 0.99999
Target:  5'- --cUGGCGgugCGgagucucauagcaGUGGgGGUGuGUGGCa -3'
miRNA:   3'- guaACUGCa--GU-------------UACCgCCAUuUACCG- -5'
29240 3' -46.6 NC_006150.1 + 108844 0.66 0.99999
Target:  5'- ---cGACG--GAUGGUGGUGcg-GGCg -3'
miRNA:   3'- guaaCUGCagUUACCGCCAUuuaCCG- -5'
29240 3' -46.6 NC_006150.1 + 1720 0.66 0.999986
Target:  5'- gGUUGGCGgcggCAuUGGCG----AUGGCg -3'
miRNA:   3'- gUAACUGCa---GUuACCGCcauuUACCG- -5'
29240 3' -46.6 NC_006150.1 + 40148 0.66 0.999986
Target:  5'- --aUGACGaCGAUGaaacgacaaCGGUGGAUGGUg -3'
miRNA:   3'- guaACUGCaGUUACc--------GCCAUUUACCG- -5'
29240 3' -46.6 NC_006150.1 + 1757 0.67 0.999974
Target:  5'- --gUGACGggg--GGCaGGUGAGUGGg -3'
miRNA:   3'- guaACUGCaguuaCCG-CCAUUUACCg -5'
29240 3' -46.6 NC_006150.1 + 188700 0.67 0.999974
Target:  5'- -uUUGAUGaCAGagGGCGGUAcgguauacGUGGCa -3'
miRNA:   3'- guAACUGCaGUUa-CCGCCAUu-------UACCG- -5'
29240 3' -46.6 NC_006150.1 + 208321 0.67 0.999965
Target:  5'- ---cGACGUUc-UGGCGG---GUGGCu -3'
miRNA:   3'- guaaCUGCAGuuACCGCCauuUACCG- -5'
29240 3' -46.6 NC_006150.1 + 34237 0.67 0.999965
Target:  5'- --aUGGCuagUAGUGGCGcGaUAGAUGGCc -3'
miRNA:   3'- guaACUGca-GUUACCGC-C-AUUUACCG- -5'
29240 3' -46.6 NC_006150.1 + 154195 0.67 0.999965
Target:  5'- --cUGGUGUCGcUGGUGGUAucagcGGUGGUa -3'
miRNA:   3'- guaACUGCAGUuACCGCCAU-----UUACCG- -5'
29240 3' -46.6 NC_006150.1 + 42239 0.68 0.999937
Target:  5'- ---aGGCGUCAgaugccgaAUcGGUGGUuaguGUGGCa -3'
miRNA:   3'- guaaCUGCAGU--------UA-CCGCCAuu--UACCG- -5'
29240 3' -46.6 NC_006150.1 + 142777 0.68 0.999937
Target:  5'- --cUGGaaaaGGUGGCGGUGGAuuuUGGCg -3'
miRNA:   3'- guaACUgcagUUACCGCCAUUU---ACCG- -5'
29240 3' -46.6 NC_006150.1 + 92301 0.68 0.999917
Target:  5'- ---gGugGUgGgaGUGGUGGUGauGAUGGUg -3'
miRNA:   3'- guaaCugCAgU--UACCGCCAU--UUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.