miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29240 5' -50.8 NC_006150.1 + 187136 0.66 0.99763
Target:  5'- aUGUUGAGUGCAUGUCCAUggUGAaagCg -3'
miRNA:   3'- gACGGUUCAUGUACGGGUA--ACUgcaG- -5'
29240 5' -50.8 NC_006150.1 + 171545 0.66 0.996689
Target:  5'- aUGCaCAGGUgaGCAUGUCCAU-GAUGg- -3'
miRNA:   3'- gACG-GUUCA--UGUACGGGUAaCUGCag -5'
29240 5' -50.8 NC_006150.1 + 90525 0.67 0.994718
Target:  5'- -gGCCGAGUcuGCAaacaguucaaUGgCCGUUGuCGUCg -3'
miRNA:   3'- gaCGGUUCA--UGU----------ACgGGUAACuGCAG- -5'
29240 5' -50.8 NC_006150.1 + 172440 0.67 0.993881
Target:  5'- uCUGCCAAGguguguucACAUGUCCG-UGGC-UCg -3'
miRNA:   3'- -GACGGUUCa-------UGUACGGGUaACUGcAG- -5'
29240 5' -50.8 NC_006150.1 + 54083 0.67 0.993881
Target:  5'- -cGCCAGaaauugaucgACAUuCCCAUUGugGUCa -3'
miRNA:   3'- gaCGGUUca--------UGUAcGGGUAACugCAG- -5'
29240 5' -50.8 NC_006150.1 + 161278 0.67 0.993881
Target:  5'- -cGUCAaugggaGGUGg--GCCUAUUGACGUCa -3'
miRNA:   3'- gaCGGU------UCAUguaCGGGUAACUGCAG- -5'
29240 5' -50.8 NC_006150.1 + 161558 0.68 0.990717
Target:  5'- -cGCCcauugACGUGuauaggaccacCCCAUUGACGUCa -3'
miRNA:   3'- gaCGGuuca-UGUAC-----------GGGUAACUGCAG- -5'
29240 5' -50.8 NC_006150.1 + 108977 0.68 0.989415
Target:  5'- -aGCCGGGUGagaggcGCCgGUUGGCGUa -3'
miRNA:   3'- gaCGGUUCAUgua---CGGgUAACUGCAg -5'
29240 5' -50.8 NC_006150.1 + 63856 0.68 0.986387
Target:  5'- -gGCUucGUACAUGUCCAguaagugGAgGUCg -3'
miRNA:   3'- gaCGGuuCAUGUACGGGUaa-----CUgCAG- -5'
29240 5' -50.8 NC_006150.1 + 41344 0.69 0.980654
Target:  5'- uCUGCCGAGcguucUGUCCAaaaUUGAUGUCg -3'
miRNA:   3'- -GACGGUUCaugu-ACGGGU---AACUGCAG- -5'
29240 5' -50.8 NC_006150.1 + 161360 0.69 0.975937
Target:  5'- uUGgC-AGUACu--CCCAUUGACGUCa -3'
miRNA:   3'- gACgGuUCAUGuacGGGUAACUGCAG- -5'
29240 5' -50.8 NC_006150.1 + 198054 0.71 0.934497
Target:  5'- cCUGCUcuGUGCAgUGCCCAcgGGCGcCa -3'
miRNA:   3'- -GACGGuuCAUGU-ACGGGUaaCUGCaG- -5'
29240 5' -50.8 NC_006150.1 + 161204 0.77 0.717609
Target:  5'- aCUGCCAAGUGg--GCCauuuaccguCAUUGACGUCa -3'
miRNA:   3'- -GACGGUUCAUguaCGG---------GUAACUGCAG- -5'
29240 5' -50.8 NC_006150.1 + 161313 1.11 0.00867
Target:  5'- gCUGCCAAGUACAUGCCCAUUGACGUCa -3'
miRNA:   3'- -GACGGUUCAUGUACGGGUAACUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.