miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29241 3' -55.1 NC_006150.1 + 116707 0.66 0.975069
Target:  5'- gCCCcgUGGCGU---UGGGccgGGUCCAg -3'
miRNA:   3'- -GGGuaACUGCAguuACCCca-CCGGGU- -5'
29241 3' -55.1 NC_006150.1 + 217948 0.66 0.969684
Target:  5'- aCCAUgGACGUacauccaugaCGAUGGGacaaucuuGUGGCCUg -3'
miRNA:   3'- gGGUAaCUGCA----------GUUACCC--------CACCGGGu -5'
29241 3' -55.1 NC_006150.1 + 161005 0.66 0.966701
Target:  5'- gCCUAUaGGCGUCuauauaaagGGGGUGgaGCCUAu -3'
miRNA:   3'- -GGGUAaCUGCAGuua------CCCCAC--CGGGU- -5'
29241 3' -55.1 NC_006150.1 + 92911 0.66 0.966701
Target:  5'- gCCGcUUGACGgaaacgCAGUGGGGgcuauggGGCUUg -3'
miRNA:   3'- gGGU-AACUGCa-----GUUACCCCa------CCGGGu -5'
29241 3' -55.1 NC_006150.1 + 107680 0.66 0.960125
Target:  5'- gUCGUUGugGUCGGccgcUGGGGgagcgacGGCCgGg -3'
miRNA:   3'- gGGUAACugCAGUU----ACCCCa------CCGGgU- -5'
29241 3' -55.1 NC_006150.1 + 138544 0.68 0.925103
Target:  5'- aCUCAcggUGAUGUCcacgauuuGUGGGGUGGUCaCGa -3'
miRNA:   3'- -GGGUa--ACUGCAGu-------UACCCCACCGG-GU- -5'
29241 3' -55.1 NC_006150.1 + 132540 0.68 0.925103
Target:  5'- aCCGUUcGCuUCAGa-GGGUGGCCCAg -3'
miRNA:   3'- gGGUAAcUGcAGUUacCCCACCGGGU- -5'
29241 3' -55.1 NC_006150.1 + 161226 0.7 0.864095
Target:  5'- gUCAUUGACGUCAAUagGGGGcgugggaaugggcaaUGGgCCAn -3'
miRNA:   3'- gGGUAACUGCAGUUA--CCCC---------------ACCgGGU- -5'
29241 3' -55.1 NC_006150.1 + 161601 0.71 0.82064
Target:  5'- cUCCAUUGACGUCAAUGGGagggauuauauacGUcauuaauaccGCCCAu -3'
miRNA:   3'- -GGGUAACUGCAGUUACCC-------------CAc---------CGGGU- -5'
29241 3' -55.1 NC_006150.1 + 67888 0.71 0.786759
Target:  5'- uUCCAUUGcCGUUuuUGcGGG-GGCCCAc -3'
miRNA:   3'- -GGGUAACuGCAGuuAC-CCCaCCGGGU- -5'
29241 3' -55.1 NC_006150.1 + 161534 0.74 0.67202
Target:  5'- cCCCAUUGACGUCAAUa----GGCCCAc -3'
miRNA:   3'- -GGGUAACUGCAGUUAccccaCCGGGU- -5'
29241 3' -55.1 NC_006150.1 + 161362 0.74 0.642065
Target:  5'- uCCCAUUGACGUCAAUGGaGGcguaUCCAu -3'
miRNA:   3'- -GGGUAACUGCAGUUACC-CCacc-GGGU- -5'
29241 3' -55.1 NC_006150.1 + 161111 0.77 0.504362
Target:  5'- gCCAUUGACGUCAAUGGGaGUacuGCCa- -3'
miRNA:   3'- gGGUAACUGCAGUUACCC-CAc--CGGgu -5'
29241 3' -55.1 NC_006150.1 + 161269 0.77 0.504362
Target:  5'- cCCCAUUGACGUCAAUGGgaGGUGGn--- -3'
miRNA:   3'- -GGGUAACUGCAGUUACC--CCACCgggu -5'
29241 3' -55.1 NC_006150.1 + 161465 0.8 0.357212
Target:  5'- cCCUAUUGACGUCAAUGacGGUaaauGGCCCAc -3'
miRNA:   3'- -GGGUAACUGCAGUUACc-CCA----CCGGGU- -5'
29241 3' -55.1 NC_006150.1 + 161059 0.8 0.34954
Target:  5'- cCCCAUUGACGUCAAUGGGcauguacuUGGCagCCAu -3'
miRNA:   3'- -GGGUAACUGCAGUUACCCc-------ACCG--GGU- -5'
29241 3' -55.1 NC_006150.1 + 161350 0.91 0.074518
Target:  5'- uCCCAUUGACGUCAAUGGcGGUaaauGGCCCGc -3'
miRNA:   3'- -GGGUAACUGCAGUUACC-CCA----CCGGGU- -5'
29241 3' -55.1 NC_006150.1 + 161299 0.94 0.050183
Target:  5'- gCCCAUUGACGUCAAUGGGGcGGUCCu -3'
miRNA:   3'- -GGGUAACUGCAGUUACCCCaCCGGGu -5'
29241 3' -55.1 NC_006150.1 + 161294 0.98 0.026439
Target:  5'- gCCUAUUGACGUCAAUGGGGUGGUCCu -3'
miRNA:   3'- -GGGUAACUGCAGUUACCCCACCGGGu -5'
29241 3' -55.1 NC_006150.1 + 161509 1.1 0.004684
Target:  5'- uCCCAUUGACGUCAAUGGGGUGGCCCAu -3'
miRNA:   3'- -GGGUAACUGCAGUUACCCCACCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.