miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29241 5' -52.3 NC_006150.1 + 161361 0.66 0.99552
Target:  5'- -aUugGCaguacUCCC-AUUGACGUCAAUGGc -3'
miRNA:   3'- ggGugCG-----GGGGaUAACUGCAGUUACU- -5'
29241 5' -52.3 NC_006150.1 + 88457 0.66 0.99552
Target:  5'- gUCCGgGCCgCCCUAgcgcuccGACGUCGGg-- -3'
miRNA:   3'- -GGGUgCGG-GGGAUaa-----CUGCAGUUacu -5'
29241 5' -52.3 NC_006150.1 + 92061 0.67 0.992114
Target:  5'- gCCCGCGUCCCUgcuacGcCGUCuGGUGAu -3'
miRNA:   3'- -GGGUGCGGGGGauaa-CuGCAG-UUACU- -5'
29241 5' -52.3 NC_006150.1 + 204656 0.67 0.992114
Target:  5'- uCCCAaGCCCCCUGgcGAgGgUCAAa-- -3'
miRNA:   3'- -GGGUgCGGGGGAUaaCUgC-AGUUacu -5'
29241 5' -52.3 NC_006150.1 + 158824 0.67 0.991901
Target:  5'- uUCCAUGCCaCCCUGaUGAUGggcauagauaaGAUGAa -3'
miRNA:   3'- -GGGUGCGG-GGGAUaACUGCag---------UUACU- -5'
29241 5' -52.3 NC_006150.1 + 161344 0.67 0.990885
Target:  5'- aUgACGUauauuaaUCCCUcccAUUGACGUCAAUGGa -3'
miRNA:   3'- gGgUGCG-------GGGGA---UAACUGCAGUUACU- -5'
29241 5' -52.3 NC_006150.1 + 118821 0.67 0.986917
Target:  5'- gCCACGCUCCa---UGGCGUCGGcGGu -3'
miRNA:   3'- gGGUGCGGGGgauaACUGCAGUUaCU- -5'
29241 5' -52.3 NC_006150.1 + 106509 0.68 0.985277
Target:  5'- cCCCGCGgCCgcggCUGUUGcCGUCAGcUGAg -3'
miRNA:   3'- -GGGUGCgGGg---GAUAACuGCAGUU-ACU- -5'
29241 5' -52.3 NC_006150.1 + 161101 0.68 0.981533
Target:  5'- gCCAUuuaCCgCC-AUUGACGUCAAUGGg -3'
miRNA:   3'- gGGUGc--GGgGGaUAACUGCAGUUACU- -5'
29241 5' -52.3 NC_006150.1 + 117878 0.69 0.974638
Target:  5'- gCCAUGCuCUCCUGUUGaaaGCGgcauUCGGUGAg -3'
miRNA:   3'- gGGUGCG-GGGGAUAAC---UGC----AGUUACU- -5'
29241 5' -52.3 NC_006150.1 + 160257 0.7 0.951627
Target:  5'- uCCCACuCCCCUuuguUGUUGAUGaUAAUGAa -3'
miRNA:   3'- -GGGUGcGGGGG----AUAACUGCaGUUACU- -5'
29241 5' -52.3 NC_006150.1 + 161303 0.72 0.905816
Target:  5'- -aCAUGCCC---AUUGACGUCAAUGGg -3'
miRNA:   3'- ggGUGCGGGggaUAACUGCAGUUACU- -5'
29241 5' -52.3 NC_006150.1 + 161269 0.72 0.883614
Target:  5'- cCCCauugACGUCaaugggaggugggCCUAUUGACGUCAAUGGg -3'
miRNA:   3'- -GGG----UGCGGg------------GGAUAACUGCAGUUACU- -5'
29241 5' -52.3 NC_006150.1 + 161037 0.77 0.647783
Target:  5'- gCCCAuuaacgucauaggacCGCCCC--AUUGACGUCAAUGGg -3'
miRNA:   3'- -GGGU---------------GCGGGGgaUAACUGCAGUUACU- -5'
29241 5' -52.3 NC_006150.1 + 161607 0.81 0.438982
Target:  5'- -aUACGCCUCC-AUUGACGUCAAUGGg -3'
miRNA:   3'- ggGUGCGGGGGaUAACUGCAGUUACU- -5'
29241 5' -52.3 NC_006150.1 + 161516 0.82 0.395578
Target:  5'- gCCCAC-CUCCC-AUUGACGUCAAUGGg -3'
miRNA:   3'- -GGGUGcGGGGGaUAACUGCAGUUACU- -5'
29241 5' -52.3 NC_006150.1 + 161474 1.11 0.0082
Target:  5'- uCCCACGCCCCCUAUUGACGUCAAUGAc -3'
miRNA:   3'- -GGGUGCGGGGGAUAACUGCAGUUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.