Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 126676 | 0.67 | 0.998005 |
|
Target: 5'- gCCuagaUGGCGUC---GGGAGGGAUc- -3' miRNA: 3'- aGGua--ACUGCAGuuaCCCUCCCUAau -5' |
|||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 161349 | 0.68 | 0.995432 |
|
Target: 5'- cCCAUUGACGUCAAUGGc-GGu---- -3' miRNA: 3'- aGGUAACUGCAGUUACCcuCCcuaau -5' |
|||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 161060 | 0.72 | 0.96007 |
|
Target: 5'- cCCAUUGACGUCAAUGGGc------- -3' miRNA: 3'- aGGUAACUGCAGUUACCCucccuaau -5' |
|||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 161226 | 0.75 | 0.877211 |
|
Target: 5'- gUCAUUGACGUCAAUaGGGGgcguGGGAa-- -3' miRNA: 3'- aGGUAACUGCAGUUA-CCCU----CCCUaau -5' |
|||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 161363 | 0.75 | 0.877211 |
|
Target: 5'- cCCAUUGACGUCAAU-GGAGGcGUa- -3' miRNA: 3'- aGGUAACUGCAGUUAcCCUCCcUAau -5' |
|||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 161295 | 0.75 | 0.869733 |
|
Target: 5'- cCUAUUGACGUCAAUGGGGuGGu--- -3' miRNA: 3'- aGGUAACUGCAGUUACCCUcCCuaau -5' |
|||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 161508 | 0.79 | 0.673068 |
|
Target: 5'- cCCAUUGACGUCAAUGGGGuGGc--- -3' miRNA: 3'- aGGUAACUGCAGUUACCCUcCCuaau -5' |
|||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 161298 | 0.79 | 0.652106 |
|
Target: 5'- cCCAUUGACGUCAAUGGGGcGGu--- -3' miRNA: 3'- aGGUAACUGCAGUUACCCUcCCuaau -5' |
|||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 161111 | 0.81 | 0.557924 |
|
Target: 5'- gCCAUUGACGUCAAUGGGAGu----- -3' miRNA: 3'- aGGUAACUGCAGUUACCCUCccuaau -5' |
|||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 161270 | 0.9 | 0.196728 |
|
Target: 5'- cCCAUUGACGUCAAUGGGAGGuGGg-- -3' miRNA: 3'- aGGUAACUGCAGUUACCCUCC-CUaau -5' |
|||||||
| 29242 | 3' | -49.7 | NC_006150.1 | + | 161601 | 1.08 | 0.018556 |
|
Target: 5'- cUCCAUUGACGUCAAUGGGAGGGAUUAu -3' miRNA: 3'- -AGGUAACUGCAGUUACCCUCCCUAAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home