miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29243 3' -56.7 NC_006150.1 + 180617 0.66 0.9368
Target:  5'- cUGuuGGC-GGCCAACaCGU--GCUGCa -3'
miRNA:   3'- -ACggCCGaUCGGUUGaGCAggUGACG- -5'
29243 3' -56.7 NC_006150.1 + 104137 0.66 0.9368
Target:  5'- aUGCCGcagaagcccauGUUGGCCGcACUCGUCa--UGCc -3'
miRNA:   3'- -ACGGC-----------CGAUCGGU-UGAGCAGgugACG- -5'
29243 3' -56.7 NC_006150.1 + 119275 0.66 0.931944
Target:  5'- gUGCCGcGCgUGGCCAGCggCG-CCGgaaUGCc -3'
miRNA:   3'- -ACGGC-CG-AUCGGUUGa-GCaGGUg--ACG- -5'
29243 3' -56.7 NC_006150.1 + 65194 0.66 0.931445
Target:  5'- cGCCGaGCUAGCCcgacccgAACUgagCG-CCaaACUGCa -3'
miRNA:   3'- aCGGC-CGAUCGG-------UUGA---GCaGG--UGACG- -5'
29243 3' -56.7 NC_006150.1 + 69262 0.66 0.926859
Target:  5'- aUGuuGGCggUAGCCAgaACUCGUCguUaGCc -3'
miRNA:   3'- -ACggCCG--AUCGGU--UGAGCAGguGaCG- -5'
29243 3' -56.7 NC_006150.1 + 82197 0.66 0.916007
Target:  5'- aGCgGGCUGGaggucugcucgCAACUCcUCCAgCUGCu -3'
miRNA:   3'- aCGgCCGAUCg----------GUUGAGcAGGU-GACG- -5'
29243 3' -56.7 NC_006150.1 + 38092 0.66 0.916007
Target:  5'- cGCUGGCU-GCCucucGCUUGgcccCCcCUGCa -3'
miRNA:   3'- aCGGCCGAuCGGu---UGAGCa---GGuGACG- -5'
29243 3' -56.7 NC_006150.1 + 88116 0.66 0.916007
Target:  5'- aGCCacGGCUAuGcCCAGgUCG-CCACUGg -3'
miRNA:   3'- aCGG--CCGAU-C-GGUUgAGCaGGUGACg -5'
29243 3' -56.7 NC_006150.1 + 169906 0.67 0.904248
Target:  5'- gUGCCGGCgaauugugcucgUAGC--ACUCGUCCcacAUUGUg -3'
miRNA:   3'- -ACGGCCG------------AUCGguUGAGCAGG---UGACG- -5'
29243 3' -56.7 NC_006150.1 + 71551 0.67 0.898032
Target:  5'- -aCCGGCUGuGCCGugUCucUCUGCUGUu -3'
miRNA:   3'- acGGCCGAU-CGGUugAGc-AGGUGACG- -5'
29243 3' -56.7 NC_006150.1 + 106791 0.67 0.898032
Target:  5'- gUGCuCGGCUGuGCUguGACUCGUUCGgCcGCu -3'
miRNA:   3'- -ACG-GCCGAU-CGG--UUGAGCAGGU-GaCG- -5'
29243 3' -56.7 NC_006150.1 + 54257 0.67 0.891596
Target:  5'- uUGCCagaGGUUaaGGCCucCUCG-CCAUUGCu -3'
miRNA:   3'- -ACGG---CCGA--UCGGuuGAGCaGGUGACG- -5'
29243 3' -56.7 NC_006150.1 + 108991 0.67 0.891596
Target:  5'- cGCCGGUUGGCguaguuGCacgCGUCCG-UGCg -3'
miRNA:   3'- aCGGCCGAUCGgu----UGa--GCAGGUgACG- -5'
29243 3' -56.7 NC_006150.1 + 88282 0.67 0.884942
Target:  5'- cGCuCGGCUGGgCGGCaCGgaagCCugGCUGCg -3'
miRNA:   3'- aCG-GCCGAUCgGUUGaGCa---GG--UGACG- -5'
29243 3' -56.7 NC_006150.1 + 36787 0.67 0.878075
Target:  5'- aGCCGGCgagAGCgGcCUCGcgCagACUGCg -3'
miRNA:   3'- aCGGCCGa--UCGgUuGAGCa-Gg-UGACG- -5'
29243 3' -56.7 NC_006150.1 + 130721 0.67 0.875974
Target:  5'- cGCCGcaGCcaUAGCCGccugacgcauccagGCUCGU-CGCUGCg -3'
miRNA:   3'- aCGGC--CG--AUCGGU--------------UGAGCAgGUGACG- -5'
29243 3' -56.7 NC_006150.1 + 45283 0.68 0.866655
Target:  5'- aGCCGGCguuucguuauaauGCCGugUCG-CCACUc- -3'
miRNA:   3'- aCGGCCGau-----------CGGUugAGCaGGUGAcg -5'
29243 3' -56.7 NC_006150.1 + 168379 0.68 0.848566
Target:  5'- uUGCCGGCcugcugguguUGGCCcga--GUCCACgUGCg -3'
miRNA:   3'- -ACGGCCG----------AUCGGuugagCAGGUG-ACG- -5'
29243 3' -56.7 NC_006150.1 + 149827 0.68 0.848566
Target:  5'- aGCCuGGCUGGCCGcgaaccAC-CGUgaaCACUGUg -3'
miRNA:   3'- aCGG-CCGAUCGGU------UGaGCAg--GUGACG- -5'
29243 3' -56.7 NC_006150.1 + 156376 0.69 0.824449
Target:  5'- cUGCaCGGCUuucagaucccaGGCCuGCUUGauUCCACUGg -3'
miRNA:   3'- -ACG-GCCGA-----------UCGGuUGAGC--AGGUGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.