Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29244 | 5' | -56.5 | NC_006150.1 | + | 32121 | 0.66 | 0.954353 |
Target: 5'- aGAGuucccauuguCCUGGUgGAUGgcGGCCgCGUGUu -3' miRNA: 3'- gCUC----------GGGCUAgCUACaaCCGG-GCACG- -5' |
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29244 | 5' | -56.5 | NC_006150.1 | + | 190061 | 0.66 | 0.950469 |
Target: 5'- uGAGgCUGAUUGugcuuggccUGUUGGCC-GUGCu -3' miRNA: 3'- gCUCgGGCUAGCu--------ACAACCGGgCACG- -5' |
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29244 | 5' | -56.5 | NC_006150.1 | + | 108974 | 0.67 | 0.909785 |
Target: 5'- gCGAGCCgGGUgaGAggcgccgGUUGGCguaguugcacgcguCCGUGCg -3' miRNA: 3'- -GCUCGGgCUAg-CUa------CAACCG--------------GGCACG- -5' |
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29244 | 5' | -56.5 | NC_006150.1 | + | 851 | 0.67 | 0.91152 |
Target: 5'- cCGGGCgCCGG-CGGUGUagacggugUGGCCgCGaGCg -3' miRNA: 3'- -GCUCG-GGCUaGCUACA--------ACCGG-GCaCG- -5' |
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29244 | 5' | -56.5 | NC_006150.1 | + | 164506 | 0.68 | 0.899577 |
Target: 5'- -uAGCgCUaGUUGAUGUUGGaagaCCGUGCa -3' miRNA: 3'- gcUCG-GGcUAGCUACAACCg---GGCACG- -5' |
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29244 | 5' | -56.5 | NC_006150.1 | + | 105930 | 0.68 | 0.893281 |
Target: 5'- -cAGCCCGAcgGAUGa-GGCCCGagUGCg -3' miRNA: 3'- gcUCGGGCUagCUACaaCCGGGC--ACG- -5' |
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29244 | 5' | -56.5 | NC_006150.1 | + | 45741 | 0.68 | 0.897711 |
Target: 5'- uGGGCCCGAUCGAUacgccuuaUGGgCCGauuaagaaauuacuUGCa -3' miRNA: 3'- gCUCGGGCUAGCUAca------ACCgGGC--------------ACG- -5' |
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29244 | 5' | -56.5 | NC_006150.1 | + | 168383 | 0.69 | 0.851184 |
Target: 5'- -cGGCCUGc-UGGUGUUGGCCCGaguccacgUGCg -3' miRNA: 3'- gcUCGGGCuaGCUACAACCGGGC--------ACG- -5' |
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29244 | 5' | -56.5 | NC_006150.1 | + | 170492 | 0.7 | 0.802486 |
Target: 5'- aCGAGCCaCGGUCGcgggauUGUUGGUCacUGCa -3' miRNA: 3'- -GCUCGG-GCUAGCu-----ACAACCGGgcACG- -5' |
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29244 | 5' | -56.5 | NC_006150.1 | + | 169604 | 1.12 | 0.002971 |
Target: 5'- cCGAGCCCGAUCGAUGUUGGCCCGUGCu -3' miRNA: 3'- -GCUCGGGCUAGCUACAACCGGGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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