miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29245 3' -55.1 NC_006150.1 + 147107 0.66 0.969684
Target:  5'- gGGGGCUgCuuG-CGgUuUGCAAACCGg -3'
miRNA:   3'- gCUCCGA-GggCaGCgAuACGUUUGGC- -5'
29245 3' -55.1 NC_006150.1 + 90775 0.66 0.969684
Target:  5'- gGAGGCUgCUGUUGCg--GCAuuuCCu -3'
miRNA:   3'- gCUCCGAgGGCAGCGauaCGUuu-GGc -5'
29245 3' -55.1 NC_006150.1 + 47981 0.66 0.966701
Target:  5'- cCGAGGCagcaaugucuggUCCuUGcCGCgagGUGUGAGCCGg -3'
miRNA:   3'- -GCUCCG------------AGG-GCaGCGa--UACGUUUGGC- -5'
29245 3' -55.1 NC_006150.1 + 172682 0.66 0.965767
Target:  5'- aGAGGCUCCUGcgaugCGCUcgccaaagggcuggAUGCcagaGGGCCa -3'
miRNA:   3'- gCUCCGAGGGCa----GCGA--------------UACG----UUUGGc -5'
29245 3' -55.1 NC_006150.1 + 206703 0.67 0.948666
Target:  5'- uGAGGCUCCCa--GCUAccGUcgGCCGc -3'
miRNA:   3'- gCUCCGAGGGcagCGAUa-CGuuUGGC- -5'
29245 3' -55.1 NC_006150.1 + 180158 0.67 0.944406
Target:  5'- aCGAucGCaccgCCGUgGCUGUGCGAACCGc -3'
miRNA:   3'- -GCUc-CGag--GGCAgCGAUACGUUUGGC- -5'
29245 3' -55.1 NC_006150.1 + 107280 0.68 0.930271
Target:  5'- ---uGUUgCCGUUGUUGUGCGAGCCa -3'
miRNA:   3'- gcucCGAgGGCAGCGAUACGUUUGGc -5'
29245 3' -55.1 NC_006150.1 + 88155 0.68 0.927198
Target:  5'- gCGAGGC-CCCgGUgggcgggggggugggCGCagUGUGCAAGCCa -3'
miRNA:   3'- -GCUCCGaGGG-CA---------------GCG--AUACGUUUGGc -5'
29245 3' -55.1 NC_006150.1 + 191939 0.68 0.919155
Target:  5'- cCGA-GCUUCUGaggcacaUCGCaUGUGCGAGCCGg -3'
miRNA:   3'- -GCUcCGAGGGC-------AGCG-AUACGUUUGGC- -5'
29245 3' -55.1 NC_006150.1 + 105757 0.7 0.861126
Target:  5'- aCGAGGCUCCCGagGag--GcCGAGCUGg -3'
miRNA:   3'- -GCUCCGAGGGCagCgauaC-GUUUGGC- -5'
29245 3' -55.1 NC_006150.1 + 172104 1.09 0.005664
Target:  5'- cCGAGGCUCCCGUCGCUAUGCAAACCGu -3'
miRNA:   3'- -GCUCCGAGGGCAGCGAUACGUUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.