miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29248 5' -53.7 NC_006150.1 + 117142 0.66 0.974861
Target:  5'- -cGGCgaugauCUGC-ACGCCUuc-GCGGUu -3'
miRNA:   3'- uaCCGau----GACGuUGCGGAuaaCGCCA- -5'
29248 5' -53.7 NC_006150.1 + 58471 0.66 0.969226
Target:  5'- --uGCUGCUGCugUGCUUGUUGCuGUu -3'
miRNA:   3'- uacCGAUGACGuuGCGGAUAACGcCA- -5'
29248 5' -53.7 NC_006150.1 + 88595 0.67 0.955367
Target:  5'- -cGGCUcCaGCGAuCGCCgaagcgAUUGCGGUu -3'
miRNA:   3'- uaCCGAuGaCGUU-GCGGa-----UAACGCCA- -5'
29248 5' -53.7 NC_006150.1 + 45712 0.67 0.951331
Target:  5'- uUGGCuUGCUGCAccaaACGCCccacaUGUGGg -3'
miRNA:   3'- uACCG-AUGACGU----UGCGGaua--ACGCCa -5'
29248 5' -53.7 NC_006150.1 + 138723 0.67 0.947058
Target:  5'- cUGGCUGCcuggucauuugGCGGCGCCUugccuuuucGCGGUu -3'
miRNA:   3'- uACCGAUGa----------CGUUGCGGAuaa------CGCCA- -5'
29248 5' -53.7 NC_006150.1 + 168433 0.68 0.937788
Target:  5'- uUGGCUAgccgGCAGCGCacGUUGUGGg -3'
miRNA:   3'- uACCGAUga--CGUUGCGgaUAACGCCa -5'
29248 5' -53.7 NC_006150.1 + 153383 0.68 0.932787
Target:  5'- aGUGGUgccACaGCAGCGCUUucUGCGGa -3'
miRNA:   3'- -UACCGa--UGaCGUUGCGGAuaACGCCa -5'
29248 5' -53.7 NC_006150.1 + 176119 0.68 0.927539
Target:  5'- -cGGCga-UGUAGCGUUcaUGUUGCGGUa -3'
miRNA:   3'- uaCCGaugACGUUGCGG--AUAACGCCA- -5'
29248 5' -53.7 NC_006150.1 + 184288 0.68 0.927539
Target:  5'- -gGGCUugUGgGACacauGCCUA-UGCGGg -3'
miRNA:   3'- uaCCGAugACgUUG----CGGAUaACGCCa -5'
29248 5' -53.7 NC_006150.1 + 105301 0.68 0.924273
Target:  5'- uGUGGC-GCUGCAcgaagcggcuuaguaACGCCguacucaGUUGCGGc -3'
miRNA:   3'- -UACCGaUGACGU---------------UGCGGa------UAACGCCa -5'
29248 5' -53.7 NC_006150.1 + 118250 0.69 0.886782
Target:  5'- -cGGCUcgacuuuguggacgcGCUGCAAUGCCUGUgccaccCGGUc -3'
miRNA:   3'- uaCCGA---------------UGACGUUGCGGAUAac----GCCA- -5'
29248 5' -53.7 NC_006150.1 + 68711 0.69 0.88327
Target:  5'- uUGGCUuuACUGCcucugcuGACGCCgcuaGCGGUg -3'
miRNA:   3'- uACCGA--UGACG-------UUGCGGauaaCGCCA- -5'
29248 5' -53.7 NC_006150.1 + 90765 0.7 0.876806
Target:  5'- -gGGUUGCUGCGGagGCUgcUGUUGCGGc -3'
miRNA:   3'- uaCCGAUGACGUUg-CGG--AUAACGCCa -5'
29248 5' -53.7 NC_006150.1 + 119893 0.7 0.837695
Target:  5'- --cGCUACaGCAugGCCUGUUugccGCGGg -3'
miRNA:   3'- uacCGAUGaCGUugCGGAUAA----CGCCa -5'
29248 5' -53.7 NC_006150.1 + 90891 0.72 0.755914
Target:  5'- uGUGGUUGCgGCGAagcaGCCUGgggUGCGGc -3'
miRNA:   3'- -UACCGAUGaCGUUg---CGGAUa--ACGCCa -5'
29248 5' -53.7 NC_006150.1 + 82166 0.75 0.602795
Target:  5'- --aGCUGCUGCGuCGCCUG-UGCGGa -3'
miRNA:   3'- uacCGAUGACGUuGCGGAUaACGCCa -5'
29248 5' -53.7 NC_006150.1 + 180431 1.05 0.009476
Target:  5'- gAUGGCUACUGCAACGCCUAUUGCGGUu -3'
miRNA:   3'- -UACCGAUGACGUUGCGGAUAACGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.