miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29249 3' -53.3 NC_006150.1 + 207705 0.66 0.991855
Target:  5'- --uACUccAGGgagAGCCAGGccCCUGGCa -3'
miRNA:   3'- ccuUGGcuUCCa--UCGGUCCa-GGAUCG- -5'
29249 3' -53.3 NC_006150.1 + 35148 0.66 0.99072
Target:  5'- uGGGAUCGAccGGUGGCCgccauagguGGGUgCggUGGCa -3'
miRNA:   3'- -CCUUGGCUu-CCAUCGG---------UCCAgG--AUCG- -5'
29249 3' -53.3 NC_006150.1 + 513 0.66 0.99072
Target:  5'- uGGGGaaGggGGUcGCCGGGgCCgcggaUAGCc -3'
miRNA:   3'- -CCUUggCuuCCAuCGGUCCaGG-----AUCG- -5'
29249 3' -53.3 NC_006150.1 + 878 0.66 0.989464
Target:  5'- aGGAACCGGuuuuuauuucAGcGUGcGCCGGGcgCC-GGCg -3'
miRNA:   3'- -CCUUGGCU----------UC-CAU-CGGUCCa-GGaUCG- -5'
29249 3' -53.3 NC_006150.1 + 127172 0.66 0.985573
Target:  5'- uGGAGuuGAAaaggccaucaaucucGGUggAGCCGGGgCUUGGCu -3'
miRNA:   3'- -CCUUggCUU---------------CCA--UCGGUCCaGGAUCG- -5'
29249 3' -53.3 NC_006150.1 + 112997 0.66 0.985573
Target:  5'- uGGACUGGGguuagagacgcgcauGGgGGCUAGGUCCUguaGGCu -3'
miRNA:   3'- cCUUGGCUU---------------CCaUCGGUCCAGGA---UCG- -5'
29249 3' -53.3 NC_006150.1 + 194801 0.67 0.983068
Target:  5'- uGGAGCgcuCGAGuGUAGCCAGuaucUCUUGGCu -3'
miRNA:   3'- -CCUUG---GCUUcCAUCGGUCc---AGGAUCG- -5'
29249 3' -53.3 NC_006150.1 + 202837 0.67 0.981087
Target:  5'- uGGAGgCGGAGGcgcuugaAGCgCGGGagCUGGCa -3'
miRNA:   3'- -CCUUgGCUUCCa------UCG-GUCCagGAUCG- -5'
29249 3' -53.3 NC_006150.1 + 88306 0.67 0.979818
Target:  5'- gGGAGCagggGAGGGUAuGCCGGGgggaggggguagcgCC-AGCg -3'
miRNA:   3'- -CCUUGg---CUUCCAU-CGGUCCa-------------GGaUCG- -5'
29249 3' -53.3 NC_006150.1 + 70732 0.67 0.978937
Target:  5'- ---uCCGAuggugAGGUAGCgCAGGUCCa--- -3'
miRNA:   3'- ccuuGGCU-----UCCAUCG-GUCCAGGaucg -5'
29249 3' -53.3 NC_006150.1 + 174722 0.67 0.976611
Target:  5'- aGGAGCgGGacaGGGUucgggaucugAGUCGGGUUCUGGa -3'
miRNA:   3'- -CCUUGgCU---UCCA----------UCGGUCCAGGAUCg -5'
29249 3' -53.3 NC_006150.1 + 76365 0.67 0.976611
Target:  5'- uGGGugCGAGGGacgGGCgCAGGUg--GGCa -3'
miRNA:   3'- -CCUugGCUUCCa--UCG-GUCCAggaUCG- -5'
29249 3' -53.3 NC_006150.1 + 213276 0.67 0.976611
Target:  5'- uGGAACUGAAGGUAGUagcauuGGUaguuGCa -3'
miRNA:   3'- -CCUUGGCUUCCAUCGgu----CCAggauCG- -5'
29249 3' -53.3 NC_006150.1 + 181915 0.67 0.976369
Target:  5'- -aGGCCGAGGG-AGCgaagCAGaaaguguGUCCUAGCg -3'
miRNA:   3'- ccUUGGCUUCCaUCG----GUC-------CAGGAUCG- -5'
29249 3' -53.3 NC_006150.1 + 443 0.68 0.971404
Target:  5'- gGGAgGCUGGAGGggGGCCcggGGGUCgcGGCg -3'
miRNA:   3'- -CCU-UGGCUUCCa-UCGG---UCCAGgaUCG- -5'
29249 3' -53.3 NC_006150.1 + 183573 0.68 0.967294
Target:  5'- aGGAGgCGGuggagggGGGUGGCUAggacgcuuuaacacGGUCuCUGGCg -3'
miRNA:   3'- -CCUUgGCU-------UCCAUCGGU--------------CCAG-GAUCG- -5'
29249 3' -53.3 NC_006150.1 + 148758 0.68 0.961763
Target:  5'- cGGGACCGAGGcGggAGCUgaugcugGGGUCagGGCg -3'
miRNA:   3'- -CCUUGGCUUC-Ca-UCGG-------UCCAGgaUCG- -5'
29249 3' -53.3 NC_006150.1 + 94245 0.69 0.946706
Target:  5'- gGGAGCC---GGUGGCgUAGGUgUUGGCg -3'
miRNA:   3'- -CCUUGGcuuCCAUCG-GUCCAgGAUCG- -5'
29249 3' -53.3 NC_006150.1 + 10312 0.7 0.916746
Target:  5'- aGGAACCGGAGGUAGaa---UCCUuGCg -3'
miRNA:   3'- -CCUUGGCUUCCAUCgguccAGGAuCG- -5'
29249 3' -53.3 NC_006150.1 + 28071 0.71 0.898629
Target:  5'- aGGAACacAAGGcagcUGGCCaAGGUCCUcAGCg -3'
miRNA:   3'- -CCUUGgcUUCC----AUCGG-UCCAGGA-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.