miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2925 3' -40.6 NC_001493.1 + 22687 0.66 1
Target:  5'- gAAUAAUGUGu---GUCaauGAGGUGCCg -3'
miRNA:   3'- gUUAUUACACuauuCGGc--UUUUACGG- -5'
2925 3' -40.6 NC_001493.1 + 58193 0.69 1
Target:  5'- ---gAGUGUGGUGAaccucaCCGAcAAUGCCc -3'
miRNA:   3'- guuaUUACACUAUUc-----GGCUuUUACGG- -5'
2925 3' -40.6 NC_001493.1 + 130174 0.68 1
Target:  5'- ---gAGUG-GAUGGGCgCGG--GUGCCa -3'
miRNA:   3'- guuaUUACaCUAUUCG-GCUuuUACGG- -5'
2925 3' -40.6 NC_001493.1 + 14619 0.68 1
Target:  5'- ---gAGUG-GAUGGGCgCGG--GUGCCa -3'
miRNA:   3'- guuaUUACaCUAUUCG-GCUuuUACGG- -5'
2925 3' -40.6 NC_001493.1 + 125264 0.67 1
Target:  5'- ------cGUGGUAGGCCGuga--GCCc -3'
miRNA:   3'- guuauuaCACUAUUCGGCuuuuaCGG- -5'
2925 3' -40.6 NC_001493.1 + 9710 0.67 1
Target:  5'- ------cGUGGUAGGCCGuga--GCCc -3'
miRNA:   3'- guuauuaCACUAUUCGGCuuuuaCGG- -5'
2925 3' -40.6 NC_001493.1 + 118752 0.67 1
Target:  5'- --------gGAcgAGGUCGAGGAUGCCa -3'
miRNA:   3'- guuauuacaCUa-UUCGGCUUUUACGG- -5'
2925 3' -40.6 NC_001493.1 + 3198 0.67 1
Target:  5'- --------gGAcgAGGUCGAGGAUGCCa -3'
miRNA:   3'- guuauuacaCUa-UUCGGCUUUUACGG- -5'
2925 3' -40.6 NC_001493.1 + 29198 0.66 1
Target:  5'- ------gGUGAUgGAGCUGGAAGccGCCg -3'
miRNA:   3'- guuauuaCACUA-UUCGGCUUUUa-CGG- -5'
2925 3' -40.6 NC_001493.1 + 10436 0.66 1
Target:  5'- uGAUGAUGaUGAUGaAGUCGAguaaaaaaaaaagAAGUGCg -3'
miRNA:   3'- gUUAUUAC-ACUAU-UCGGCU-------------UUUACGg -5'
2925 3' -40.6 NC_001493.1 + 80733 0.66 1
Target:  5'- gAAUAA-GUGGgccaCCGAuGAUGCCg -3'
miRNA:   3'- gUUAUUaCACUauucGGCUuUUACGG- -5'
2925 3' -40.6 NC_001493.1 + 54916 0.66 1
Target:  5'- aCAGUucucgGAUGAGCCGAcca-GCCc -3'
miRNA:   3'- -GUUAuuacaCUAUUCGGCUuuuaCGG- -5'
2925 3' -40.6 NC_001493.1 + 20512 0.69 1
Target:  5'- ----cAUGUGAUAGGCCcccgg-GCCu -3'
miRNA:   3'- guuauUACACUAUUCGGcuuuuaCGG- -5'
2925 3' -40.6 NC_001493.1 + 67021 0.68 1
Target:  5'- ---cGAUGUGuuucguGCCGAucagccccgggauGGAUGCCa -3'
miRNA:   3'- guuaUUACACuauu--CGGCU-------------UUUACGG- -5'
2925 3' -40.6 NC_001493.1 + 23835 0.67 1
Target:  5'- ------cGUGAUcuagAGGCCGAGAAggcgGCUc -3'
miRNA:   3'- guuauuaCACUA----UUCGGCUUUUa---CGG- -5'
2925 3' -40.6 NC_001493.1 + 20401 0.66 1
Target:  5'- -------aUGAUGAGCCcGAGcUGCCa -3'
miRNA:   3'- guuauuacACUAUUCGGcUUUuACGG- -5'
2925 3' -40.6 NC_001493.1 + 99216 0.66 1
Target:  5'- uGAUGAUGgGAUAuucaaGGCCGGAAcggaGCUg -3'
miRNA:   3'- gUUAUUACaCUAU-----UCGGCUUUua--CGG- -5'
2925 3' -40.6 NC_001493.1 + 125990 0.66 1
Target:  5'- uGAUGAUGaUGAUGaAGUCGAguaaaaaaaaaagAAGUGCg -3'
miRNA:   3'- gUUAUUAC-ACUAU-UCGGCU-------------UUUACGg -5'
2925 3' -40.6 NC_001493.1 + 70515 0.71 0.999995
Target:  5'- ---cAGUGUGAUccGCCGGGAuccccGCCc -3'
miRNA:   3'- guuaUUACACUAuuCGGCUUUua---CGG- -5'
2925 3' -40.6 NC_001493.1 + 85157 0.71 0.999993
Target:  5'- gGGUGAccccUGUGAUucuGCCGAGGuuacgGCCg -3'
miRNA:   3'- gUUAUU----ACACUAuu-CGGCUUUua---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.