Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2925 | 5' | -59.2 | NC_001493.1 | + | 43458 | 0.76 | 0.24425 |
Target: 5'- cGGGGgGUCgaucugCGCGGCCGAUCUcGUAgACg -3' miRNA: 3'- -CCCCgCAG------GCGCCGGUUAGA-CGUgUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 47579 | 0.66 | 0.757806 |
Target: 5'- cGGGCGUCacaaaGCcGCUGcUCgUGCGCGCg -3' miRNA: 3'- cCCCGCAGg----CGcCGGUuAG-ACGUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 69578 | 0.66 | 0.728059 |
Target: 5'- aGGGGgGacucugCCGCGGCCucggcucguucgcGAUCggGgACACg -3' miRNA: 3'- -CCCCgCa-----GGCGCCGG-------------UUAGa-CgUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 38009 | 0.67 | 0.689563 |
Target: 5'- gGGGGCGaugaUCGgGGCCG---UGUACGCg -3' miRNA: 3'- -CCCCGCa---GGCgCCGGUuagACGUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 66139 | 0.68 | 0.62609 |
Target: 5'- cGGGGUGacucgaugggaacaUCCGCGa-CGGUCUGuCGCACg -3' miRNA: 3'- -CCCCGC--------------AGGCGCcgGUUAGAC-GUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 105899 | 0.68 | 0.602859 |
Target: 5'- gGGGGUGaggguuaucaguuucUUCGCGGugugaucaucgcCCAuGUCUGCGCGCg -3' miRNA: 3'- -CCCCGC---------------AGGCGCC------------GGU-UAGACGUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 32607 | 0.69 | 0.577736 |
Target: 5'- cGGGCGuuuacggUCCGgGGCCAuAUCcGCGCGu -3' miRNA: 3'- cCCCGC-------AGGCgCCGGU-UAGaCGUGUg -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 94883 | 0.66 | 0.719265 |
Target: 5'- cGGGGCGUCgGacaCGGCCA-UCgcccccgugGCACcCa -3' miRNA: 3'- -CCCCGCAGgC---GCCGGUuAGa--------CGUGuG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 7615 | 0.67 | 0.709425 |
Target: 5'- uGGGGCucgugugcGUCCGCGGCauaCGGUC-GCAUc- -3' miRNA: 3'- -CCCCG--------CAGGCGCCG---GUUAGaCGUGug -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 123170 | 0.67 | 0.709425 |
Target: 5'- uGGGGCucgugugcGUCCGCGGCauaCGGUC-GCAUc- -3' miRNA: 3'- -CCCCG--------CAGGCGCCG---GUUAGaCGUGug -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 95737 | 0.67 | 0.699522 |
Target: 5'- -cGGUGUgaugauaucaCCGCGGCUcAUCaUGUACACg -3' miRNA: 3'- ccCCGCA----------GGCGCCGGuUAG-ACGUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 65708 | 0.67 | 0.679557 |
Target: 5'- cGGGCGggUGUGGCCAGaagaaGCACGCu -3' miRNA: 3'- cCCCGCagGCGCCGGUUaga--CGUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 92617 | 0.67 | 0.679557 |
Target: 5'- cGGcGGCGagaucaggaucuUCCGCGgcguguaucGCCAAUCcgGUACACu -3' miRNA: 3'- -CC-CCGC------------AGGCGC---------CGGUUAGa-CGUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 90154 | 0.67 | 0.669514 |
Target: 5'- uGGGUGgacaCCGCacaaccGGCCGGUCcGUGCGCg -3' miRNA: 3'- cCCCGCa---GGCG------CCGGUUAGaCGUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 101952 | 0.67 | 0.669514 |
Target: 5'- aGGGGgGUCUggGUGGCCAGUCgagGaguuucaAUACa -3' miRNA: 3'- -CCCCgCAGG--CGCCGGUUAGa--Cg------UGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 107969 | 0.68 | 0.608911 |
Target: 5'- aGGGGgaccccccgUGUCCGCGGUCAgccucAUCgcgGCgaGCACg -3' miRNA: 3'- -CCCC---------GCAGGCGCCGGU-----UAGa--CG--UGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 102228 | 0.68 | 0.608911 |
Target: 5'- aGGcGGCcaggGUCgCGUGGCUGAUgaGCGCGCu -3' miRNA: 3'- -CC-CCG----CAG-GCGCCGGUUAgaCGUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 106768 | 0.68 | 0.598827 |
Target: 5'- gGGGGCGaCuCGUGGCUAAaCUGgGCGa -3' miRNA: 3'- -CCCCGCaG-GCGCCGGUUaGACgUGUg -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 32798 | 0.73 | 0.368307 |
Target: 5'- aGGGuaGUCCGCGaCCGggAUCgGCACGCg -3' miRNA: 3'- -CCCcgCAGGCGCcGGU--UAGaCGUGUG- -5' |
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2925 | 5' | -59.2 | NC_001493.1 | + | 75724 | 0.66 | 0.767192 |
Target: 5'- cGGGUGUgCGCGGCCGuGUCgauauUGUaACAUg -3' miRNA: 3'- cCCCGCAgGCGCCGGU-UAG-----ACG-UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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