miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29251 3' -58.7 NC_006150.1 + 438 0.66 0.859621
Target:  5'- -gUUCCgGGAGGCUggagGGGgGCCcgGGGg -3'
miRNA:   3'- gaAGGGgUCUCCGG----UCCgCGGuaUCU- -5'
29251 3' -58.7 NC_006150.1 + 7655 0.66 0.859621
Target:  5'- --aCCCCauGGAGGCUAc-UGCCAUAGAa -3'
miRNA:   3'- gaaGGGG--UCUCCGGUccGCGGUAUCU- -5'
29251 3' -58.7 NC_006150.1 + 75732 0.66 0.859621
Target:  5'- -cUCUCCGGcGGagacucgcccCCAGGCGCCAcaaacgUGGAa -3'
miRNA:   3'- gaAGGGGUCuCC----------GGUCCGCGGU------AUCU- -5'
29251 3' -58.7 NC_006150.1 + 86259 0.66 0.844411
Target:  5'- -cUCCCguGGGGCCGGcCGCCu---- -3'
miRNA:   3'- gaAGGGguCUCCGGUCcGCGGuaucu -5'
29251 3' -58.7 NC_006150.1 + 136797 0.66 0.836533
Target:  5'- aCUUcCCCCAGcuucaaaaAGGUCAGGC-CC-UAGAu -3'
miRNA:   3'- -GAA-GGGGUC--------UCCGGUCCGcGGuAUCU- -5'
29251 3' -58.7 NC_006150.1 + 88634 0.67 0.820262
Target:  5'- --gCCCgggacgaGGAGGCCAccaGCGCCAUAGc -3'
miRNA:   3'- gaaGGGg------UCUCCGGUc--CGCGGUAUCu -5'
29251 3' -58.7 NC_006150.1 + 123037 0.67 0.820262
Target:  5'- uUUUCUCgcauGGAGGuCCAGGUGCCucUGGAc -3'
miRNA:   3'- gAAGGGG----UCUCC-GGUCCGCGGu-AUCU- -5'
29251 3' -58.7 NC_006150.1 + 92358 0.67 0.811883
Target:  5'- -gUCCCgAGucuGGGCCGGGCGgUggGGAu -3'
miRNA:   3'- gaAGGGgUC---UCCGGUCCGCgGuaUCU- -5'
29251 3' -58.7 NC_006150.1 + 179516 0.67 0.794674
Target:  5'- gCUUCUCCAGAGguGCCGGaGgGCCAc--- -3'
miRNA:   3'- -GAAGGGGUCUC--CGGUC-CgCGGUaucu -5'
29251 3' -58.7 NC_006150.1 + 12770 0.67 0.78586
Target:  5'- --aCCUgAGGGGCC-GGCgGCUGUGGAa -3'
miRNA:   3'- gaaGGGgUCUCCGGuCCG-CGGUAUCU- -5'
29251 3' -58.7 NC_006150.1 + 284 0.68 0.74659
Target:  5'- cCUUCCCCAgucgccgucgugccGAGGCCGcggaggacGGCuGCCcgGGGu -3'
miRNA:   3'- -GAAGGGGU--------------CUCCGGU--------CCG-CGGuaUCU- -5'
29251 3' -58.7 NC_006150.1 + 186298 0.69 0.711385
Target:  5'- -cUCuCCCAaAGGCUuGGUGCUAUAGAc -3'
miRNA:   3'- gaAG-GGGUcUCCGGuCCGCGGUAUCU- -5'
29251 3' -58.7 NC_006150.1 + 9416 0.7 0.672366
Target:  5'- --cCCUCAGaAGGgucucCCGGGCGgCCAUAGAa -3'
miRNA:   3'- gaaGGGGUC-UCC-----GGUCCGC-GGUAUCU- -5'
29251 3' -58.7 NC_006150.1 + 206910 0.7 0.621967
Target:  5'- uUUCCCCaagccaccgagguGGAGGCCGcucacaacuuuuGGCGCCGUcucucAGAu -3'
miRNA:   3'- gAAGGGG-------------UCUCCGGU------------CCGCGGUA-----UCU- -5'
29251 3' -58.7 NC_006150.1 + 172648 0.71 0.563941
Target:  5'- --aUgCCAGAGgGCCAGGUGCCAgaguGAa -3'
miRNA:   3'- gaaGgGGUCUC-CGGUCCGCGGUau--CU- -5'
29251 3' -58.7 NC_006150.1 + 70581 0.72 0.515917
Target:  5'- -cUCCUCAGucuGCCAGGCGCCAcGGc -3'
miRNA:   3'- gaAGGGGUCuc-CGGUCCGCGGUaUCu -5'
29251 3' -58.7 NC_006150.1 + 133379 0.73 0.459726
Target:  5'- aUUCCCCugcGGGGCCuguGGCggacgacGCCGUGGAa -3'
miRNA:   3'- gAAGGGGu--CUCCGGu--CCG-------CGGUAUCU- -5'
29251 3' -58.7 NC_006150.1 + 131962 0.75 0.395386
Target:  5'- gUUCCCCAGAgcGGCCAGuucgaucauacaaaaGCGCCGcGGAc -3'
miRNA:   3'- gAAGGGGUCU--CCGGUC---------------CGCGGUaUCU- -5'
29251 3' -58.7 NC_006150.1 + 186584 1.09 0.002288
Target:  5'- aCUUCCCCAGAGGCCAGGCGCCAUAGAu -3'
miRNA:   3'- -GAAGGGGUCUCCGGUCCGCGGUAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.