Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29252 | 5' | -54.3 | NC_006150.1 | + | 32478 | 0.72 | 0.706347 |
Target: 5'- uGCAGCACCAGGuaccagccgcgagGCCAGGgaAgCGCAa -3' miRNA: 3'- uUGUCGUGGUCC-------------UGGUUCgaUaGCGU- -5' |
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29252 | 5' | -54.3 | NC_006150.1 | + | 190854 | 0.73 | 0.6665 |
Target: 5'- cAACAGCACCAGGACgAAGCa------ -3' miRNA: 3'- -UUGUCGUGGUCCUGgUUCGauagcgu -5' |
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29252 | 5' | -54.3 | NC_006150.1 | + | 103276 | 0.76 | 0.513391 |
Target: 5'- uGACGGCAgCGGGACCGuGCUAaUGCAa -3' miRNA: 3'- -UUGUCGUgGUCCUGGUuCGAUaGCGU- -5' |
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29252 | 5' | -54.3 | NC_006150.1 | + | 191070 | 1.06 | 0.00675 |
Target: 5'- aAACAGCACCAGGACCAAGCUAUCGCAa -3' miRNA: 3'- -UUGUCGUGGUCCUGGUUCGAUAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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