Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29253 | 3' | -54.3 | NC_006150.1 | + | 121282 | 0.66 | 0.976101 |
|
Target: 5'- uGGGaUgGUUCAAGGcCGcUACGGCCa-- -3' miRNA: 3'- -UCC-AgCAAGUUCCaGU-AUGCCGGcca -5' |
|||||||
| 29253 | 3' | -54.3 | NC_006150.1 | + | 93056 | 0.67 | 0.964783 |
|
Target: 5'- gAGGUCG-UUAAGGUCAcuUGCaGGaUCGGa -3' miRNA: 3'- -UCCAGCaAGUUCCAGU--AUG-CC-GGCCa -5' |
|||||||
| 29253 | 3' | -54.3 | NC_006150.1 | + | 211403 | 0.67 | 0.957901 |
|
Target: 5'- -------aCAAGGUCGUcACGGCCGGa -3' miRNA: 3'- uccagcaaGUUCCAGUA-UGCCGGCCa -5' |
|||||||
| 29253 | 3' | -54.3 | NC_006150.1 | + | 105858 | 0.67 | 0.954136 |
|
Target: 5'- -aGUCGgcUAccguGGGUCAUGUGGCCGGa -3' miRNA: 3'- ucCAGCaaGU----UCCAGUAUGCCGGCCa -5' |
|||||||
| 29253 | 3' | -54.3 | NC_006150.1 | + | 183115 | 0.67 | 0.954136 |
|
Target: 5'- uGGUCGUccUCGGGGUgGcgaaagucGgGGCCGGUg -3' miRNA: 3'- uCCAGCA--AGUUCCAgUa-------UgCCGGCCA- -5' |
|||||||
| 29253 | 3' | -54.3 | NC_006150.1 | + | 116702 | 0.68 | 0.945941 |
|
Target: 5'- cGGUCGcccCGuGG-CGUugGGCCGGg -3' miRNA: 3'- uCCAGCaa-GUuCCaGUAugCCGGCCa -5' |
|||||||
| 29253 | 3' | -54.3 | NC_006150.1 | + | 113331 | 0.69 | 0.926286 |
|
Target: 5'- uGGGaCGUUUugagggaAAGGUCGUACGGCaGGc -3' miRNA: 3'- -UCCaGCAAG-------UUCCAGUAUGCCGgCCa -5' |
|||||||
| 29253 | 3' | -54.3 | NC_006150.1 | + | 109230 | 0.72 | 0.770183 |
|
Target: 5'- gAGG-CGUUCgAAGGUg--ACGGCCGGg -3' miRNA: 3'- -UCCaGCAAG-UUCCAguaUGCCGGCCa -5' |
|||||||
| 29253 | 3' | -54.3 | NC_006150.1 | + | 107677 | 0.73 | 0.733238 |
|
Target: 5'- gAGGUCGUUgu-GGUCGgccgcugggggagcgACGGCCGGg -3' miRNA: 3'- -UCCAGCAAguuCCAGUa--------------UGCCGGCCa -5' |
|||||||
| 29253 | 3' | -54.3 | NC_006150.1 | + | 191265 | 1.07 | 0.008703 |
|
Target: 5'- aAGGUCGUUCAAGGUCAUACGGCCGGUc -3' miRNA: 3'- -UCCAGCAAGUUCCAGUAUGCCGGCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home