miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29253 5' -53.3 NC_006150.1 + 138601 0.66 0.994373
Target:  5'- aACACCGUugCGgc-AUCGUgAgGACUa -3'
miRNA:   3'- -UGUGGCAugGCaacUGGCAgUgCUGG- -5'
29253 5' -53.3 NC_006150.1 + 92508 0.66 0.994373
Target:  5'- aGCGCCGUGCCc---GCUGagCACGGCg -3'
miRNA:   3'- -UGUGGCAUGGcaacUGGCa-GUGCUGg -5'
29253 5' -53.3 NC_006150.1 + 209424 0.66 0.994373
Target:  5'- cCGCUGcUACaUGUUuuaacaGCCGUCAUGACCa -3'
miRNA:   3'- uGUGGC-AUG-GCAAc-----UGGCAGUGCUGG- -5'
29253 5' -53.3 NC_006150.1 + 217445 0.66 0.992699
Target:  5'- cGCGCUGUACCGccggggacgcuugacUGACuCGUCAUccgGAUCg -3'
miRNA:   3'- -UGUGGCAUGGCa--------------ACUG-GCAGUG---CUGG- -5'
29253 5' -53.3 NC_006150.1 + 84299 0.66 0.992601
Target:  5'- -gGCCcUGCCGUUGAuaGUCAUGGuauCCu -3'
miRNA:   3'- ugUGGcAUGGCAACUggCAGUGCU---GG- -5'
29253 5' -53.3 NC_006150.1 + 92461 0.66 0.99199
Target:  5'- aACACCGUcacagcggcgaggagGCgG-UGACCGugUCGcCGGCCa -3'
miRNA:   3'- -UGUGGCA---------------UGgCaACUGGC--AGU-GCUGG- -5'
29253 5' -53.3 NC_006150.1 + 13469 0.66 0.99041
Target:  5'- gGCACCGuUACCGUUugggacgcGAUCGUUuuucuGCGugUa -3'
miRNA:   3'- -UGUGGC-AUGGCAA--------CUGGCAG-----UGCugG- -5'
29253 5' -53.3 NC_006150.1 + 89843 0.66 0.989138
Target:  5'- cGCACCGcgACC---GAUCGUCgACGGCUg -3'
miRNA:   3'- -UGUGGCa-UGGcaaCUGGCAG-UGCUGG- -5'
29253 5' -53.3 NC_006150.1 + 170040 0.67 0.987739
Target:  5'- gGCGCCGaUACCGgcgugcaggcuUUGACuCGgaGCGGCCc -3'
miRNA:   3'- -UGUGGC-AUGGC-----------AACUG-GCagUGCUGG- -5'
29253 5' -53.3 NC_006150.1 + 191017 0.67 0.987739
Target:  5'- -gACCG-GCCGUaUGACCuugaACGACCu -3'
miRNA:   3'- ugUGGCaUGGCA-ACUGGcag-UGCUGG- -5'
29253 5' -53.3 NC_006150.1 + 106785 0.67 0.986205
Target:  5'- -gGCUGUGCUG-UGACuCGUU-CGGCCg -3'
miRNA:   3'- ugUGGCAUGGCaACUG-GCAGuGCUGG- -5'
29253 5' -53.3 NC_006150.1 + 75546 0.67 0.986205
Target:  5'- gACACCGaUAgCGUuuucgUGugCuaucgcgguGUCACGGCCg -3'
miRNA:   3'- -UGUGGC-AUgGCA-----ACugG---------CAGUGCUGG- -5'
29253 5' -53.3 NC_006150.1 + 120820 0.67 0.986205
Target:  5'- cACGCCG-GCCGUUGua-G-CugGGCCg -3'
miRNA:   3'- -UGUGGCaUGGCAACuggCaGugCUGG- -5'
29253 5' -53.3 NC_006150.1 + 1729 0.67 0.986205
Target:  5'- cGCACCGgcACCGcaGACCGccUCAgcccaGACCg -3'
miRNA:   3'- -UGUGGCa-UGGCaaCUGGC--AGUg----CUGG- -5'
29253 5' -53.3 NC_006150.1 + 72489 0.67 0.984527
Target:  5'- cGCACCGcccucaGCCuacUGAUCGUCAUGuCCg -3'
miRNA:   3'- -UGUGGCa-----UGGca-ACUGGCAGUGCuGG- -5'
29253 5' -53.3 NC_006150.1 + 195351 0.67 0.984527
Target:  5'- aGCACCuGUACCGacGACUGg-ACGGCg -3'
miRNA:   3'- -UGUGG-CAUGGCaaCUGGCagUGCUGg -5'
29253 5' -53.3 NC_006150.1 + 13079 0.67 0.982699
Target:  5'- -gGCCGUACCGaagagcccGGCCGUcCACGcugcauacACCg -3'
miRNA:   3'- ugUGGCAUGGCaa------CUGGCA-GUGC--------UGG- -5'
29253 5' -53.3 NC_006150.1 + 148599 0.67 0.980713
Target:  5'- uUACCGU-CCGUcucgGACCGgcggucUUugGGCCg -3'
miRNA:   3'- uGUGGCAuGGCAa---CUGGC------AGugCUGG- -5'
29253 5' -53.3 NC_006150.1 + 196122 0.68 0.978561
Target:  5'- gGCACCGUACCaau--CCGUaCACGAg- -3'
miRNA:   3'- -UGUGGCAUGGcaacuGGCA-GUGCUgg -5'
29253 5' -53.3 NC_006150.1 + 140643 0.68 0.976236
Target:  5'- gACGCUu--CUGgUGACCGgCACGGCCg -3'
miRNA:   3'- -UGUGGcauGGCaACUGGCaGUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.