miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29254 3' -62.1 NC_006150.1 + 148378 0.66 0.769019
Target:  5'- aGUCGg-GCCguUCCGCgUCCGCggauggugcuGGCGGUg -3'
miRNA:   3'- -CGGCagCGG--AGGCGgAGGCG----------UCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 129282 0.66 0.769019
Target:  5'- -aCGUaCG-CUCCGCCUCUGCcccgacuGCAGg -3'
miRNA:   3'- cgGCA-GCgGAGGCGGAGGCGu------CGUCg -5'
29254 3' -62.1 NC_006150.1 + 99559 0.66 0.769019
Target:  5'- gGgCGUgGUCUCUGCggCCGCuGcCAGCa -3'
miRNA:   3'- -CgGCAgCGGAGGCGgaGGCGuC-GUCG- -5'
29254 3' -62.1 NC_006150.1 + 3549 0.66 0.769019
Target:  5'- -gCGUgCGCuCUCCuCUUCCuuggagGCAGCGGCg -3'
miRNA:   3'- cgGCA-GCG-GAGGcGGAGG------CGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 58733 0.66 0.761058
Target:  5'- aUCGUCGCCUgaCGCagaacagcaacaagCacaGCAGCAGCa -3'
miRNA:   3'- cGGCAGCGGAg-GCGga------------Gg--CGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 135331 0.66 0.760168
Target:  5'- cGCCaugaGCUUCCGCCUUCcCAGCGucauuGCg -3'
miRNA:   3'- -CGGcag-CGGAGGCGGAGGcGUCGU-----CG- -5'
29254 3' -62.1 NC_006150.1 + 106401 0.66 0.751219
Target:  5'- aGCCaacgUGCC-CCGUCUCCGCcccacGCuGCa -3'
miRNA:   3'- -CGGca--GCGGaGGCGGAGGCGu----CGuCG- -5'
29254 3' -62.1 NC_006150.1 + 28972 0.66 0.742178
Target:  5'- ---aUUGCCaCCGCCUCCuCGGCAaGCa -3'
miRNA:   3'- cggcAGCGGaGGCGGAGGcGUCGU-CG- -5'
29254 3' -62.1 NC_006150.1 + 115460 0.66 0.742178
Target:  5'- gGCag-CGCCUCCuGCaucaUCCGgCAGgGGCa -3'
miRNA:   3'- -CGgcaGCGGAGG-CGg---AGGC-GUCgUCG- -5'
29254 3' -62.1 NC_006150.1 + 204957 0.66 0.742178
Target:  5'- -gCGUCGUCagCGCUUCguaCAGCAGCa -3'
miRNA:   3'- cgGCAGCGGagGCGGAGgc-GUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 180728 0.66 0.742178
Target:  5'- uCC-UCGuCCUCCGCCaCCGC-GCcGCa -3'
miRNA:   3'- cGGcAGC-GGAGGCGGaGGCGuCGuCG- -5'
29254 3' -62.1 NC_006150.1 + 181892 0.66 0.736713
Target:  5'- uGCCGUUGCugcggcuucucgCUCCGCCagCGCacucgcuaccuugccGuGCAGCg -3'
miRNA:   3'- -CGGCAGCG------------GAGGCGGagGCG---------------U-CGUCG- -5'
29254 3' -62.1 NC_006150.1 + 119499 0.66 0.733053
Target:  5'- -aCGcUCGCUUCUGCCagaCGCAGcCGGUg -3'
miRNA:   3'- cgGC-AGCGGAGGCGGag-GCGUC-GUCG- -5'
29254 3' -62.1 NC_006150.1 + 118790 0.66 0.733053
Target:  5'- cGCCacGUaUGUCaCgGCCUCCggGCAGCAGCu -3'
miRNA:   3'- -CGG--CA-GCGGaGgCGGAGG--CGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 220432 0.66 0.733053
Target:  5'- -aCGUgGCCcaacgcagCCGCagCUGCGGCAGCu -3'
miRNA:   3'- cgGCAgCGGa-------GGCGgaGGCGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 72103 0.66 0.723852
Target:  5'- cUCGUCaaguaCCUgaagCCGCCgCUGUAGCAGCa -3'
miRNA:   3'- cGGCAGc----GGA----GGCGGaGGCGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 68709 0.66 0.723852
Target:  5'- gGCUuuacUGCCUCUGCUgacgCCGCuAGCGGUg -3'
miRNA:   3'- -CGGca--GCGGAGGCGGa---GGCG-UCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 546 0.66 0.723852
Target:  5'- aGCCGUCcuCCgCgGCCUCgGCAcGaCGGCg -3'
miRNA:   3'- -CGGCAGc-GGaGgCGGAGgCGU-C-GUCG- -5'
29254 3' -62.1 NC_006150.1 + 174793 0.66 0.723852
Target:  5'- uGCgCGUCGCUUCCuCCUCgGUAucaGGCg -3'
miRNA:   3'- -CG-GCAGCGGAGGcGGAGgCGUcg-UCG- -5'
29254 3' -62.1 NC_006150.1 + 301 0.67 0.70525
Target:  5'- uGCUGU-GCUggaccCCGUCUCCGUcugcucuuacuuGGCAGCu -3'
miRNA:   3'- -CGGCAgCGGa----GGCGGAGGCG------------UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.