miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29254 3' -62.1 NC_006150.1 + 301 0.67 0.70525
Target:  5'- uGCUGU-GCUggaccCCGUCUCCGUcugcucuuacuuGGCAGCu -3'
miRNA:   3'- -CGGCAgCGGa----GGCGGAGGCG------------UCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 546 0.66 0.723852
Target:  5'- aGCCGUCcuCCgCgGCCUCgGCAcGaCGGCg -3'
miRNA:   3'- -CGGCAGc-GGaGgCGGAGgCGU-C-GUCG- -5'
29254 3' -62.1 NC_006150.1 + 742 0.69 0.581604
Target:  5'- uGCCGgCGUC-CUGCC-CCGCAGagaCGGCg -3'
miRNA:   3'- -CGGCaGCGGaGGCGGaGGCGUC---GUCG- -5'
29254 3' -62.1 NC_006150.1 + 1371 0.68 0.629263
Target:  5'- gGCCGUgacUGCCUacgcccaCGCC-CUGC-GCAGCa -3'
miRNA:   3'- -CGGCA---GCGGAg------GCGGaGGCGuCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 2772 0.69 0.572144
Target:  5'- cGCCGUgccUGCgCUCUGCCUCCuccuGCuGCugAGCg -3'
miRNA:   3'- -CGGCA---GCG-GAGGCGGAGG----CGuCG--UCG- -5'
29254 3' -62.1 NC_006150.1 + 3549 0.66 0.769019
Target:  5'- -gCGUgCGCuCUCCuCUUCCuuggagGCAGCGGCg -3'
miRNA:   3'- cgGCA-GCG-GAGGcGGAGG------CGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 28972 0.66 0.742178
Target:  5'- ---aUUGCCaCCGCCUCCuCGGCAaGCa -3'
miRNA:   3'- cggcAGCGGaGGCGGAGGcGUCGU-CG- -5'
29254 3' -62.1 NC_006150.1 + 33154 0.78 0.175466
Target:  5'- cGCCGacCGCgCUCCGCCUCCGCuucGgAGCc -3'
miRNA:   3'- -CGGCa-GCG-GAGGCGGAGGCGu--CgUCG- -5'
29254 3' -62.1 NC_006150.1 + 47304 0.68 0.600612
Target:  5'- --aGUCGCCcucucuaacUCUGgacacUCUCCGCAGCAGUa -3'
miRNA:   3'- cggCAGCGG---------AGGC-----GGAGGCGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 48005 0.68 0.648383
Target:  5'- gGUCcUCGCCUCCagaaGCUgaggCCGaGGCAGCa -3'
miRNA:   3'- -CGGcAGCGGAGG----CGGa---GGCgUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 58733 0.66 0.761058
Target:  5'- aUCGUCGCCUgaCGCagaacagcaacaagCacaGCAGCAGCa -3'
miRNA:   3'- cGGCAGCGGAg-GCGga------------Gg--CGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 64170 0.68 0.619702
Target:  5'- gGCaCGUUGCCUguacaagacaUGCaagCUCUGCAGCGGCg -3'
miRNA:   3'- -CG-GCAGCGGAg---------GCG---GAGGCGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 68709 0.66 0.723852
Target:  5'- gGCUuuacUGCCUCUGCUgacgCCGCuAGCGGUg -3'
miRNA:   3'- -CGGca--GCGGAGGCGGa---GGCG-UCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 69495 0.68 0.619702
Target:  5'- gGCCcaacacCGCCUuCCaGCCgacCCGCAgGCAGCg -3'
miRNA:   3'- -CGGca----GCGGA-GG-CGGa--GGCGU-CGUCG- -5'
29254 3' -62.1 NC_006150.1 + 70457 0.7 0.534727
Target:  5'- ----cCGCCUCuCG-CUCCGCAGguGCa -3'
miRNA:   3'- cggcaGCGGAG-GCgGAGGCGUCguCG- -5'
29254 3' -62.1 NC_006150.1 + 71154 0.73 0.365514
Target:  5'- cGCCcacaccuCCUCCGCCUCCGCcaGGUGGCu -3'
miRNA:   3'- -CGGcagc---GGAGGCGGAGGCG--UCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 72103 0.66 0.723852
Target:  5'- cUCGUCaaguaCCUgaagCCGCCgCUGUAGCAGCa -3'
miRNA:   3'- cGGCAGc----GGA----GGCGGaGGCGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 72262 0.67 0.667457
Target:  5'- aCCaGUUGUUcggCgGCCUCgGCAGCGGCc -3'
miRNA:   3'- cGG-CAGCGGa--GgCGGAGgCGUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 88184 0.7 0.525502
Target:  5'- gGCCGcgCGCCcCCGCCcuUCUG-GGCGGCc -3'
miRNA:   3'- -CGGCa-GCGGaGGCGG--AGGCgUCGUCG- -5'
29254 3' -62.1 NC_006150.1 + 88511 0.68 0.61015
Target:  5'- aGCCGagCGCacgCUCCGCCccCCGCcagGGCuGCg -3'
miRNA:   3'- -CGGCa-GCG---GAGGCGGa-GGCG---UCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.